Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SNORA26.3-201ENST00000391119 136 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 UBA52P6-201ENST00000399822 382 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 AL133475.1-201ENST00000404414 305 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 HMGB3P2-201ENST00000411913 584 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 AL590135.1-201ENST00000422215 156 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 AC019205.3-201ENST00000424573 156 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 USP9YP16-201ENST00000430287 407 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 AC004383.1-201ENST00000438135 289 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 AC016700.2-201ENST00000446011 156 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 USP9YP23-201ENST00000455085 407 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 MTATP8P1-201ENST00000467115 207 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 MTCO2P24-201ENST00000515611 426 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 AC093331.1-201ENST00000521474 169 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 AL021879.1-201ENST00000611756 288 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 AP003355.3-201ENST00000623465 114 ntBASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
TRIM39Q9HCM9 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 Z75746.1-201ENST00000440243 2080 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 Y_RNA.153-201ENST00000363615 91 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 Y_RNA.551-201ENST00000384661 102 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 MIR23B-201ENST00000384832 97 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 MIR218-2-201ENST00000385006 110 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 RPS29P4-201ENST00000414733 161 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 AL358075.3-201ENST00000426289 226 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 AC006989.1-201ENST00000427212 131 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 MTCYBP9-201ENST00000431021 303 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 AP001324.2-201ENST00000461163 319 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 MRPS35P2-201ENST00000508242 191 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 AC110768.1-201ENST00000509222 400 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 AC074250.1-201ENST00000511117 192 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 RNU6-635P-201ENST00000516651 102 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 AC008739.3-201ENST00000603262 127 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 AC099778.2-201ENST00000610904 211 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 MIR8058-201ENST00000615737 89 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 MIR6075-201ENST00000620782 95 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
TRIM39Q9HCM9 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 Y_RNA.27-201ENST00000362540 103 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 RNU1-76P-201ENST00000362903 159 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 RNU6-137P-201ENST00000363680 108 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 RNU6-1027P-201ENST00000383998 107 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 U3.39-201ENST00000408569 239 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 AL356968.1-201ENST00000416622 474 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 AC012306.1-201ENST00000423267 114 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 U8.20-201ENST00000459445 131 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 AIG1P1-201ENST00000503376 148 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 AC110794.1-201ENST00000505816 425 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 SNORA70.18-201ENST00000516696 98 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 AC131281.1-201ENST00000522984 164 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 AL442163.3-201ENST00000554110 156 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 AC073410.2-201ENST00000603240 332 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 AL159153.1-201ENST00000619688 317 ntBASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
TRIM39Q9HCM9 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 CEP170P1-201ENST00000502249 4587 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 RNA5SP119-201ENST00000362715 117 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 RNA5SP42-201ENST00000364278 115 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 MIR670-201ENST00000390142 98 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 RPL21P75-201ENST00000396599 483 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 RPL21P28-201ENST00000401418 483 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 RNU6-1140P-201ENST00000410517 106 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AL590556.1-201ENST00000423231 483 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 HMGN2P31-201ENST00000432430 273 ntBASIC3.51□□□□□ -1.85
TRIM39Q9HCM9 AC073910.1-201ENST00000445047 438 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms