Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 MTATP6P16-201ENST00000434543 526 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 NAF1-205ENST00000509434 385 ntTSL 3 BASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 AF213884.2-201ENST00000510417 903 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 MIR6828-201ENST00000636181 60 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 RNU6-269P-201ENST00000391077 97 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 AC245102.2-201ENST00000448956 180 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 AC025627.3-201ENST00000582078 182 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 uc_338.28-201ENST00000612082 187 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 MIR1267-201ENST00000408723 78 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 RPS15AP38-201ENST00000413110 372 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 AL109913.1-201ENST00000421173 514 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 AC006210.1-201ENST00000424882 111 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 SNORA25.12-201ENST00000516202 82 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 RN7SKP258-201ENST00000517151 304 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 U4atac.1-201ENST00000618345 95 ntBASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC-0.9□□□□□ -2.55
VPS13AQ96RL7 RNU6-1082P-201ENST00000364574 107 ntBASIC-0.91□□□□□ -2.55
VPS13AQ96RL7 AL139396.1-201ENST00000421137 167 ntBASIC-0.91□□□□□ -2.55
VPS13AQ96RL7 RNU7-165P-201ENST00000458864 60 ntBASIC-0.91□□□□□ -2.55
VPS13AQ96RL7 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC-0.91□□□□□ -2.55
VPS13AQ96RL7 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC-0.91□□□□□ -2.55
VPS13AQ96RL7 AC009237.15-201ENST00000610252 501 ntBASIC-0.91□□□□□ -2.55
VPS13AQ96RL7 MTND5P16-201ENST00000460269 1703 ntBASIC-0.91□□□□□ -2.56
VPS13AQ96RL7 Y_RNA.37-201ENST00000362606 108 ntBASIC-0.91□□□□□ -2.56
VPS13AQ96RL7 RNU6-163P-201ENST00000384396 106 ntBASIC-0.91□□□□□ -2.56
VPS13AQ96RL7 AL353621.1-201ENST00000418219 243 ntBASIC-0.91□□□□□ -2.56
VPS13AQ96RL7 RPL7P55-201ENST00000450522 746 ntBASIC-0.91□□□□□ -2.56
VPS13AQ96RL7 AC011005.2-201ENST00000487324 359 ntBASIC-0.91□□□□□ -2.56
VPS13AQ96RL7 AC111000.5-201ENST00000506559 1178 ntBASIC-0.91□□□□□ -2.56
VPS13AQ96RL7 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.91□□□□□ -2.56
VPS13AQ96RL7 TAF9BP2-201ENST00000400856 499 ntBASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 MIR548H2-201ENST00000408874 88 ntBASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 RNU4-46P-201ENST00000410818 138 ntBASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 MTND4LP21-201ENST00000415303 295 ntBASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 AC107626.1-201ENST00000471084 183 ntBASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 HMGB1P22-201ENST00000505315 124 ntBASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 AL365496.1-201ENST00000426885 215 ntBASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 AC092125.1-201ENST00000562568 1995 ntBASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 AC010615.1-201ENST00000594254 1764 ntBASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 RNA5SP291-201ENST00000517222 105 ntBASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 AL670379.3-201ENST00000605040 251 ntBASIC-0.92□□□□□ -2.56
VPS13AQ96RL7 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC-0.93□□□□□ -2.56
VPS13AQ96RL7 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC-0.93□□□□□ -2.56
VPS13AQ96RL7 AC109445.1-201ENST00000512356 383 ntBASIC-0.93□□□□□ -2.56
VPS13AQ96RL7 RNU6-983P-201ENST00000516004 103 ntBASIC-0.93□□□□□ -2.56
VPS13AQ96RL7 AL590282.1-201ENST00000610379 1136 ntBASIC-0.93□□□□□ -2.56
VPS13AQ96RL7 AC091912.2-201ENST00000624798 167 ntBASIC-0.93□□□□□ -2.56
VPS13AQ96RL7 RNA5SP125-201ENST00000364843 120 ntBASIC-0.93□□□□□ -2.56
VPS13AQ96RL7 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC-0.93□□□□□ -2.56
VPS13AQ96RL7 MTCO3P7-201ENST00000510008 774 ntBASIC-0.93□□□□□ -2.56
VPS13AQ96RL7 MIR4499-201ENST00000584834 69 ntBASIC-0.93□□□□□ -2.56
VPS13AQ96RL7 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC-0.93□□□□□ -2.56
VPS13AQ96RL7 SNORA25.7-201ENST00000364375 127 ntBASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 RNU6-880P-201ENST00000384526 107 ntBASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 AC006026.2-201ENST00000457376 180 ntBASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 AL357080.1-201ENST00000617394 239 ntBASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 AF228730.1-201ENST00000397972 663 ntBASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 AC023050.1-201ENST00000498198 304 ntBASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 AC103705.1-201ENST00000619013 241 ntBASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 AL162726.3-218ENST00000636401 95 ntBASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 SNORD114-25-201ENST00000363742 72 ntBASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 C1DP2-201ENST00000418167 426 ntBASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 C1DP4-201ENST00000455429 424 ntBASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 MED28P6-201ENST00000558776 231 ntBASIC-0.94□□□□□ -2.56
VPS13AQ96RL7 Y_RNA.53-201ENST00000362765 102 ntBASIC-0.95□□□□□ -2.56
VPS13AQ96RL7 RNU6-793P-201ENST00000384233 104 ntBASIC-0.95□□□□□ -2.56
VPS13AQ96RL7 U3.29-201ENST00000391296 212 ntBASIC-0.95□□□□□ -2.56
VPS13AQ96RL7 AL591034.2-201ENST00000402839 359 ntBASIC-0.95□□□□□ -2.56
VPS13AQ96RL7 ARL5AP1-201ENST00000418991 388 ntBASIC-0.95□□□□□ -2.56
VPS13AQ96RL7 SNORA31.6-201ENST00000516241 130 ntBASIC-0.95□□□□□ -2.56
VPS13AQ96RL7 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-0.95□□□□□ -2.56
VPS13AQ96RL7 AL096829.2-201ENST00000446582 742 ntBASIC-0.95□□□□□ -2.56
VPS13AQ96RL7 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC-0.95□□□□□ -2.56
VPS13AQ96RL7 RNU6-1096P-201ENST00000517089 102 ntBASIC-0.95□□□□□ -2.56
VPS13AQ96RL7 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC-0.95□□□□□ -2.56
VPS13AQ96RL7 AC233702.2-202ENST00000562547 291 ntBASIC-0.95□□□□□ -2.56
VPS13AQ96RL7 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 Y_RNA.225-201ENST00000364326 97 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 MRPS18CP6-201ENST00000423587 223 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 AC093422.3-201ENST00000428506 305 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 AC091959.1-201ENST00000495857 238 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 RMST_7.1-201ENST00000621935 268 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 RPL22P22-201ENST00000395439 379 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 RNU6-1328P-201ENST00000410938 106 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 SNORA31.10-201ENST00000516482 106 ntBASIC-0.96□□□□□ -2.56
VPS13AQ96RL7 AC012669.1-201ENST00000603209 283 ntBASIC-0.96□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms