Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 AC091932.3-201ENST00000624223 323 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 CENPCP1-201ENST00000533085 2578 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
ZNF560Q96MR9 RNU6-517P-201ENST00000384362 110 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 Y_RNA.553-201ENST00000384670 102 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 MIR583-201ENST00000384846 75 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 MIR504-201ENST00000385065 83 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 RNU6-903P-201ENST00000391270 109 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.07□□□□□ -2.08
ZNF560Q96MR9 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.07□□□□□ -2.08
ZNF560Q96MR9 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.07□□□□□ -2.08
ZNF560Q96MR9 AL122001.1-201ENST00000457027 370 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 SNRPFP3-201ENST00000457792 225 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 RPL23AP42-201ENST00000471152 471 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 RPL21P99-201ENST00000480369 423 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.07□□□□□ -2.08
ZNF560Q96MR9 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
ZNF560Q96MR9 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.07□□□□□ -2.08
ZNF560Q96MR9 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.07□□□□□ -2.08
ZNF560Q96MR9 SNORA25.17-201ENST00000517184 124 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 COPS8P3-201ENST00000526024 482 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 AP001893.2-201ENST00000526949 202 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.07□□□□□ -2.08
ZNF560Q96MR9 CYCSP27-201ENST00000527643 293 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.07□□□□□ -2.08
ZNF560Q96MR9 AL137161.1-201ENST00000532231 390 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 BNIP3P16-201ENST00000589779 534 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 VN1R107P-201ENST00000601784 209 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 AC091805.2-201ENST00000603848 235 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 Z82243.1-201ENST00000609432 473 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
ZNF560Q96MR9 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.07□□□□□ -2.08
ZNF560Q96MR9 MTND4P14-201ENST00000435799 1354 ntBASIC2.07□□□□□ -2.08
ZNF560Q96MR9 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
ZNF560Q96MR9 snoU2_19.1-201ENST00000362361 80 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 RNU6-1285P-201ENST00000363480 105 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 RNU6-944P-201ENST00000364023 107 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 U3.13-201ENST00000364804 214 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 RNA5SP138-201ENST00000365098 114 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
ZNF560Q96MR9 MIR518A2-201ENST00000384966 87 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 MIR1289-2-201ENST00000408360 111 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 EIF1AXP1-201ENST00000419267 435 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AL445685.2-201ENST00000422551 342 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AC243964.1-201ENST00000441814 261 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.06□□□□□ -2.08
ZNF560Q96MR9 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.06□□□□□ -2.08
ZNF560Q96MR9 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.06□□□□□ -2.08
ZNF560Q96MR9 HMGB1P35-201ENST00000503360 598 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.06□□□□□ -2.08
ZNF560Q96MR9 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.06□□□□□ -2.08
ZNF560Q96MR9 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.06□□□□□ -2.08
ZNF560Q96MR9 RNA5SP182-201ENST00000516064 82 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 Y_RNA.688-201ENST00000516565 95 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AC104984.5-201ENST00000586878 94 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AC008752.3-201ENST00000588113 712 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AC110760.3-201ENST00000598794 467 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AC119751.7-201ENST00000600494 245 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AC073648.5-201ENST00000603502 305 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AC025811.1-201ENST00000604312 472 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 MIR6715A-201ENST00000615929 79 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AL359314.1-201ENST00000616913 261 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AC098657.3-201ENST00000620434 263 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AC097372.5-201ENST00000623665 376 ntBASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.06□□□□□ -2.08
ZNF560Q96MR9 AC008555.8-201ENST00000623602 2168 ntBASIC2.05□□□□□ -2.08
ZNF560Q96MR9 RNU6-552P-201ENST00000362869 119 ntBASIC2.05□□□□□ -2.08
ZNF560Q96MR9 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
ZNF560Q96MR9 CBX3P6-201ENST00000430257 527 ntBASIC2.05□□□□□ -2.08
ZNF560Q96MR9 RPS15AP10-201ENST00000432472 382 ntBASIC2.05□□□□□ -2.08
ZNF560Q96MR9 MTCO1P19-201ENST00000443487 500 ntBASIC2.05□□□□□ -2.08
ZNF560Q96MR9 FDX1P2-201ENST00000450769 375 ntBASIC2.05□□□□□ -2.08
ZNF560Q96MR9 AC022447.4-201ENST00000504053 364 ntBASIC2.05□□□□□ -2.08
ZNF560Q96MR9 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.05□□□□□ -2.08
ZNF560Q96MR9 RN7SKP298-201ENST00000515950 94 ntBASIC2.05□□□□□ -2.08
ZNF560Q96MR9 RNU5F-2P-201ENST00000516066 82 ntBASIC2.05□□□□□ -2.08
ZNF560Q96MR9 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.05□□□□□ -2.08
ZNF560Q96MR9 RSL24D1P11-201ENST00000591045 491 ntBASIC2.05□□□□□ -2.08
ZNF560Q96MR9 AC123912.5-201ENST00000605470 343 ntBASIC2.05□□□□□ -2.08
ZNF560Q96MR9 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.05□□□□□ -2.08
ZNF560Q96MR9 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
ZNF560Q96MR9 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.05□□□□□ -2.08
ZNF560Q96MR9 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
ZNF560Q96MR9 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
ZNF560Q96MR9 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
ZNF560Q96MR9 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
ZNF560Q96MR9 MIR29C-201ENST00000385231 88 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 RNA5SP338-201ENST00000410495 85 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 RNU6-293P-201ENST00000411259 106 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 AC073464.1-201ENST00000429823 534 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.04□□□□□ -2.08
ZNF560Q96MR9 AC010424.1-201ENST00000506336 297 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 RNA5SP364-201ENST00000516938 78 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 AC110588.1-201ENST00000559699 137 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 AGGF1P4-201ENST00000568249 801 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms