Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 RNU6-1027P-201ENST00000383998 107 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.597-201ENST00000410463 100 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 AL139156.1-201ENST00000412785 841 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 PIGPP3-201ENST00000425307 415 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 AL157831.1-201ENST00000426134 473 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 AC009237.7-201ENST00000447357 229 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 PPBPP1-201ENST00000510807 373 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 AC026726.1-201ENST00000512859 601 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 AC022080.3-201ENST00000544433 482 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 AL162424.1-201ENST00000602325 221 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 AL356218.2-201ENST00000605264 187 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 MIR7515-201ENST00000637837 67 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 GHR-213ENST00000622294 4312 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 RNA5SP139-201ENST00000364340 117 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 RNA5SP509-201ENST00000364577 119 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 RNU6-662P-201ENST00000384253 104 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.590-201ENST00000410140 107 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 RPS29P17-201ENST00000430795 166 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 RBMY2UP-201ENST00000453474 324 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 RN7SL691P-201ENST00000494487 301 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 AL592156.1-201ENST00000508758 304 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 RNU6-344P-201ENST00000516635 111 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 MIR4644-201ENST00000579929 84 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 RN7SL176P-201ENST00000580352 264 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 AC006133.1-201ENST00000617106 264 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 MIR6758-201ENST00000620653 63 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 AL049781.1-201ENST00000623195 3585 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 AC091152.2-201ENST00000591628 2569 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 MAPK10-372ENST00000641954 3413 ntBASIC3.31□□□□□ -1.88
CCDC140Q96MF4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC140Q96MF4 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.29-201ENST00000362570 113 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 RNU1-94P-201ENST00000362627 173 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 RNU6-486P-201ENST00000363116 107 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 RNU6-324P-201ENST00000363957 106 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 U1.1-201ENST00000384101 164 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 HMGN2P8-201ENST00000391458 268 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 MIR1179-201ENST00000408703 91 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 RNU6-1199P-201ENST00000411249 104 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 RPL18P10-201ENST00000425606 538 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 RPL23AP81-201ENST00000455252 467 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 SNORD116-28-201ENST00000516123 91 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 RNA5SP519-201ENST00000516480 119 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 SNORA27.4-201ENST00000516650 95 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 PARP1P2-201ENST00000556806 195 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 MIR4277-201ENST00000578298 84 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 AC006380.1-201ENST00000603598 186 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 AC068205.3-201ENST00000636385 468 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 MAPK10-322ENST00000641485 4530 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms