Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC146507.2-201ENST00000460608 476 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 AC091179.1-201ENST00000461606 579 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 RPS29P19-201ENST00000479709 171 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 RN7SL459P-201ENST00000481078 302 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 AC103975.1-201ENST00000482506 483 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 AC010469.2-201ENST00000496412 480 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 AC067942.3-201ENST00000512025 362 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 RNU6-1012P-201ENST00000516606 109 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 AC010999.1-201ENST00000611856 324 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 AC005562.2-201ENST00000618264 111 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 7SK.10-201ENST00000621414 298 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 AC080128.1-201ENST00000474389 1917 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 AC138915.1-201ENST00000565427 1685 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 Y_RNA.439-201ENST00000384119 94 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 Y_RNA.458-201ENST00000384240 102 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 RNU6-318P-201ENST00000384283 103 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 RNU6-713P-201ENST00000384761 107 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 RNU6-1109P-201ENST00000391187 107 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 RNU6-1001P-201ENST00000411265 100 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 AC006466.1-201ENST00000438721 289 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 RPS4XP2-201ENST00000458402 793 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 AC023141.11-201ENST00000508864 202 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 RNU7-143P-201ENST00000516781 65 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 RN7SKP209-201ENST00000516888 304 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 AC090517.1-201ENST00000569307 266 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 AC091042.1-201ENST00000579213 173 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 MIR4737-201ENST00000583979 81 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 AC079587.1-201ENST00000603846 277 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 RAC1P9-201ENST00000604990 392 ntBASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
CLRN3Q8NCR9 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 RNU1-62P-201ENST00000362599 164 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 RNA5SP361-201ENST00000362686 118 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 Y_RNA.47-201ENST00000362697 108 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 MIR329-1-201ENST00000385028 80 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 MIR550A3-201ENST00000390735 95 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 MRPL35P1-201ENST00000404272 572 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 MIR1251-201ENST00000408552 70 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 SNORD12B-201ENST00000410433 91 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 RPL7AP25-201ENST00000423357 805 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 AL445305.1-201ENST00000432577 575 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 AC092324.1-201ENST00000468671 324 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 Y_RNA.683-201ENST00000516508 93 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 RNU6-586P-201ENST00000517265 104 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 HSPE1P18-201ENST00000517602 280 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 AL713866.2-201ENST00000603579 219 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 AL049539.1-201ENST00000611964 459 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 AC240442.1-201ENST00000616055 283 ntBASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
CLRN3Q8NCR9 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 AC000403.1-201ENST00000613696 3585 ntBASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 Y_RNA.179-201ENST00000363844 90 ntBASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 Y_RNA.183-201ENST00000363882 113 ntBASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 SNORA18.3-201ENST00000384122 132 ntBASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 RNU6-793P-201ENST00000384233 104 ntBASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 RPL21P1-201ENST00000399532 476 ntBASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 Y_RNA.595-201ENST00000410403 105 ntBASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 AL731563.1-201ENST00000442202 214 ntBASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 AC007395.1-201ENST00000451333 677 ntBASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 CYP2C59P-201ENST00000457790 269 ntBASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 TRBV12-2-201ENST00000489763 344 ntBASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 RNU6-897P-201ENST00000517135 105 ntBASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.11□□□□□ -1.91
CLRN3Q8NCR9 RAB9BP1-201ENST00000519581 626 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 140 ms