Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.32□□□□□ -2.04
RTL3Q8N8U3 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
RTL3Q8N8U3 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
RTL3Q8N8U3 RNU6-487P-201ENST00000365430 104 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 MIR144-201ENST00000384886 86 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 MIR561-201ENST00000385216 97 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.31□□□□□ -2.04
RTL3Q8N8U3 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.31□□□□□ -2.04
RTL3Q8N8U3 CR769767.1-201ENST00000436337 346 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.31□□□□□ -2.04
RTL3Q8N8U3 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.31□□□□□ -2.04
RTL3Q8N8U3 PRDX4P1-201ENST00000507189 574 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 Y_RNA.665-201ENST00000516177 98 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 SNORA31.11-201ENST00000516528 139 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 RNA5SP82-201ENST00000516707 92 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 RNA5SP402-201ENST00000517148 110 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.31□□□□□ -2.04
RTL3Q8N8U3 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.31□□□□□ -2.04
RTL3Q8N8U3 MTND4P7-201ENST00000523876 130 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 AC087241.2-201ENST00000535801 324 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 CR383656.8-201ENST00000549046 145 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 AC090115.3-201ENST00000553218 849 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.31□□□□□ -2.04
RTL3Q8N8U3 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.31□□□□□ -2.04
RTL3Q8N8U3 LRRC37A5P-203ENST00000580181 585 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 AL713866.2-201ENST00000603579 219 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
RTL3Q8N8U3 AL137847.3-201ENST00000611521 109 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 AC022418.1-201ENST00000624118 445 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 MTND4P14-201ENST00000435799 1354 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 AC121333.1-201ENST00000567488 2709 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.31□□□□□ -2.04
RTL3Q8N8U3 MTND5P6-201ENST00000422338 1798 ntBASIC2.31□□□□□ -2.04
RTL3Q8N8U3 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
RTL3Q8N8U3 RNU6-1010P-201ENST00000362757 107 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 SNORA6-201ENST00000384033 151 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 RNU6-434P-201ENST00000384376 107 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 RNU6-45P-201ENST00000384471 107 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 RNU6-393P-201ENST00000384475 107 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 SNORD116-20-201ENST00000384529 92 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 MIR221-201ENST00000385135 110 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 SNORD70.1-201ENST00000391007 85 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 RNU2-3P-201ENST00000410144 191 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 RNU6-607P-201ENST00000411283 108 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 RPL21P90-201ENST00000415692 466 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 ARL5AP1-201ENST00000418991 388 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 AL139413.1-201ENST00000421309 217 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.3□□□□□ -2.04
RTL3Q8N8U3 RNU6-1208P-201ENST00000459588 107 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 Y_RNA.654-201ENST00000497848 106 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 AC074344.1-201ENST00000512823 224 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 Y_RNA.687-201ENST00000516558 91 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 SNORA48.11-201ENST00000517015 89 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 AC109329.1-201ENST00000518744 317 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 AC134698.4-201ENST00000523451 826 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 AP002770.2-201ENST00000543613 532 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 BNIP3P6-201ENST00000549284 499 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.3□□□□□ -2.04
RTL3Q8N8U3 SNORD53-201ENST00000579969 78 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 MIR4513-201ENST00000581077 86 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 MIR4435-1-201ENST00000582552 80 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.3□□□□□ -2.04
RTL3Q8N8U3 uc_338.15-201ENST00000615470 191 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
RTL3Q8N8U3 AL590808.1-201ENST00000618696 141 ntBASIC2.3□□□□□ -2.04
RTL3Q8N8U3 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
RTL3Q8N8U3 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
RTL3Q8N8U3 RNU6-942P-201ENST00000363002 107 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 RNU4-66P-201ENST00000365199 138 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 MIR186-201ENST00000384988 86 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 MIR95-201ENST00000385072 81 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 AL445529.1-201ENST00000398713 389 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 PGBD4P6-201ENST00000421501 610 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.29□□□□□ -2.04
RTL3Q8N8U3 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.29□□□□□ -2.04
RTL3Q8N8U3 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.29□□□□□ -2.04
RTL3Q8N8U3 MTATP6P23-201ENST00000440153 476 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.29□□□□□ -2.04
RTL3Q8N8U3 RNU7-167P-201ENST00000459160 62 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 RPL21P99-201ENST00000480369 423 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.29□□□□□ -2.04
RTL3Q8N8U3 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.29□□□□□ -2.04
RTL3Q8N8U3 AC008413.1-201ENST00000511864 177 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 RNU2-53P-201ENST00000516257 147 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.29□□□□□ -2.04
RTL3Q8N8U3 MIR3941-201ENST00000582572 103 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 AC092807.2-201ENST00000609367 243 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 AC103705.1-201ENST00000619013 241 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 AC009831.4-201ENST00000620744 325 ntBASIC2.29□□□□□ -2.04
RTL3Q8N8U3 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.29□□□□□ -2.04
RTL3Q8N8U3 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
RTL3Q8N8U3 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
RTL3Q8N8U3 CASC19-280ENST00000642102 1351 ntBASIC2.28□□□□□ -2.04
RTL3Q8N8U3 RNU6-384P-201ENST00000364900 104 ntBASIC2.28□□□□□ -2.04
RTL3Q8N8U3 Y_RNA.303-201ENST00000364998 94 ntBASIC2.28□□□□□ -2.04
RTL3Q8N8U3 Y_RNA.378-201ENST00000365652 113 ntBASIC2.28□□□□□ -2.04
RTL3Q8N8U3 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
RTL3Q8N8U3 RNY3P14-201ENST00000384309 102 ntBASIC2.28□□□□□ -2.04
RTL3Q8N8U3 MT-TL1-201ENST00000386347 75 ntBASIC2.28□□□□□ -2.04
RTL3Q8N8U3 SNORD37.1-201ENST00000390968 65 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 144.4 ms