Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 U8.7-201ENST00000364940 136 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 RNU6-619P-201ENST00000365146 108 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 RNU4-48P-201ENST00000365559 182 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 SNORD116-23-201ENST00000384645 92 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 Y_RNA.548-201ENST00000384656 105 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 SNORA11.1-201ENST00000408133 129 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 RNA5SP504-201ENST00000410676 117 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 USP9YP22-201ENST00000438971 294 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 snoU13.14-201ENST00000459372 104 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 AC027338.1-201ENST00000514840 825 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 RNU6-390P-201ENST00000516259 103 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 snoU13.31-201ENST00000607291 104 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 AC078938.1-201ENST00000620993 318 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 MIR6852-201ENST00000621699 66 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 AL078595.3-201ENST00000623815 1166 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 MIR3529-201ENST00000637713 78 ntBASIC-0.48□□□□□ -2.49
LINC00643Q86TS7 RNU6-512P-201ENST00000364438 103 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 RNU6-1078P-201ENST00000364522 103 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 RNU1-133P-201ENST00000364867 167 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AL034345.1-201ENST00000407768 123 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 MTCO2P1-201ENST00000424648 477 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AL121890.1-201ENST00000435457 205 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 RPL37P21-201ENST00000435890 276 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 LARP1BP3-201ENST00000437229 869 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AC243964.1-201ENST00000441814 261 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AL929288.2-201ENST00000446368 407 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AC020550.1-201ENST00000447385 163 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AC012308.1-201ENST00000451232 178 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AC116347.2-201ENST00000514912 523 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 MIR3136-201ENST00000583498 78 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AP000942.3-201ENST00000603702 160 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AC136443.5-201ENST00000603741 370 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AL392048.1-201ENST00000613946 534 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 MIR6788-201ENST00000618842 66 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 AC092634.7-201ENST00000621022 103 ntBASIC-0.49□□□□□ -2.49
LINC00643Q86TS7 5S_rRNA.2-201ENST00000391293 112 ntBASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 MIR548J-201ENST00000408833 112 ntBASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 RN7SKP266-201ENST00000410232 287 ntBASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 RNU2-28P-201ENST00000410457 189 ntBASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 VN1R10P-201ENST00000447106 875 ntBASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 AC022364.2-201ENST00000457963 554 ntBASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 SNORA40.12-201ENST00000516329 111 ntBASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 SNORA62.5-201ENST00000516634 120 ntBASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 AL136317.1-201ENST00000612653 226 ntBASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 AC136475.10-201ENST00000620253 385 ntBASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 AC019226.1-201ENST00000625666 515 ntBASIC-0.5□□□□□ -2.49
LINC00643Q86TS7 RNU6-212P-201ENST00000362642 104 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 Y_RNA.140-201ENST00000363474 103 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 RNU6-487P-201ENST00000365430 104 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 RNU6-505P-201ENST00000384427 107 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 RNU6-843P-201ENST00000384454 104 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 RNU2-23P-201ENST00000410545 195 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 RNU4-27P-201ENST00000410889 139 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 AC068533.2-201ENST00000411872 306 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 LAMTOR3P2-201ENST00000504479 232 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 AC048346.1-201ENST00000510247 144 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 RNU6-863P-201ENST00000515989 104 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 RNU6-405P-201ENST00000516637 110 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 RNU6-467P-201ENST00000517027 110 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 SUB1P2-201ENST00000556401 297 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 MIR5190-201ENST00000581537 80 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 AF038458.1-201ENST00000588406 262 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 SGO1P1-201ENST00000603525 1447 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 PRELID3BP2-201ENST00000605362 201 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 AL031667.3-201ENST00000620124 655 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 AC020763.5-201ENST00000623298 430 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 AC119674.1-220ENST00000641502 1048 ntBASIC-0.51□□□□□ -2.49
LINC00643Q86TS7 RNU6-582P-201ENST00000362989 107 ntBASIC-0.52□□□□□ -2.49
LINC00643Q86TS7 RNA5SP128-201ENST00000365305 116 ntBASIC-0.52□□□□□ -2.49
LINC00643Q86TS7 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC-0.52□□□□□ -2.49
LINC00643Q86TS7 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC-0.52□□□□□ -2.49
LINC00643Q86TS7 MIR16-1-201ENST00000385271 89 ntBASIC-0.52□□□□□ -2.49
LINC00643Q86TS7 AC016769.2-201ENST00000414815 475 ntBASIC-0.52□□□□□ -2.49
LINC00643Q86TS7 AC002486.1-201ENST00000435098 391 ntBASIC-0.52□□□□□ -2.49
LINC00643Q86TS7 AC104332.1-201ENST00000440471 797 ntBASIC-0.52□□□□□ -2.49
LINC00643Q86TS7 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC-0.52□□□□□ -2.49
LINC00643Q86TS7 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC-0.52□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms