Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC105148.1-201ENST00000604961 409 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 DLEU2_6.2-201ENST00000620994 136 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC009268.2-201ENST00000621925 457 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC080188.3-201ENST00000624842 748 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC090625.1-201ENST00000357130 210 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 RNU6-45P-201ENST00000384471 107 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 MIR520A-201ENST00000384862 85 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 MIR518A1-201ENST00000385068 85 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AL133264.1-201ENST00000407157 562 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 RNU2-23P-201ENST00000410545 195 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 RNA5SP25-201ENST00000410815 110 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 RPL21P24-201ENST00000413752 448 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 MTATP6P27-201ENST00000416987 621 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC0.07□□□□□ -2.4
USF3Q68DE3 RPL37P21-201ENST00000435890 276 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 USP9YP22-201ENST00000438971 294 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC092001.1-201ENST00000453012 261 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC026410.2-201ENST00000460281 156 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC048334.1-201ENST00000477975 159 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC093259.1-201ENST00000509755 300 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 SNORA31.2-201ENST00000516019 134 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 RNU6-927P-201ENST00000516199 100 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AL136520.1-202ENST00000555494 763 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.07□□□□□ -2.4
USF3Q68DE3 AC126365.2-201ENST00000580630 379 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC0.07□□□□□ -2.4
USF3Q68DE3 AC073410.2-201ENST00000603240 332 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC090578.1-201ENST00000604955 591 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC0.07□□□□□ -2.4
USF3Q68DE3 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.07□□□□□ -2.4
USF3Q68DE3 RNU6-1167P-201ENST00000363227 94 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.06□□□□□ -2.4
USF3Q68DE3 MTATP6P30-201ENST00000443540 664 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 AC020550.1-201ENST00000447385 163 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 RPS26P45-201ENST00000471748 340 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.06□□□□□ -2.4
USF3Q68DE3 RNU6-1183P-201ENST00000517054 60 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC0.06□□□□□ -2.4
USF3Q68DE3 AC104417.1-201ENST00000523974 751 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC0.06□□□□□ -2.4
USF3Q68DE3 LARP7P1-201ENST00000605576 316 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 AC092106.3-201ENST00000611308 722 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 AC130324.3-201ENST00000614165 542 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 Y_RNA.185-201ENST00000363894 100 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.06□□□□□ -2.4
USF3Q68DE3 PDCL2P1-201ENST00000419302 352 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.06□□□□□ -2.4
USF3Q68DE3 MTCO1P57-201ENST00000432182 261 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.06□□□□□ -2.4
USF3Q68DE3 RNU7-59P-201ENST00000459101 61 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 RNU6-758P-201ENST00000516292 89 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 SNORA70.22-201ENST00000517160 124 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 UTP23-205ENST00000520733 369 ntTSL 3 BASIC0.06□□□□□ -2.4
USF3Q68DE3 MIR3136-201ENST00000583498 78 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC0.06□□□□□ -2.4
USF3Q68DE3 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC0.06□□□□□ -2.4
USF3Q68DE3 AC034229.4-201ENST00000607861 441 ntBASIC0.06□□□□□ -2.4
USF3Q68DE3 SNORD3E-201ENST00000362899 217 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 RNU6-359P-201ENST00000365466 108 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 RNU6-296P-201ENST00000384608 107 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 AC093422.3-201ENST00000428506 305 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.05□□□□□ -2.4
USF3Q68DE3 AL162395.1-201ENST00000457882 422 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 snoU13.19-201ENST00000459148 104 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC0.05□□□□□ -2.4
USF3Q68DE3 AC079140.3-201ENST00000511111 550 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 AC115989.2-201ENST00000578640 563 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 VN1R83P-201ENST00000595685 445 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 AC107304.1-201ENST00000604229 296 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 AL390208.1-201ENST00000605885 644 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 AC012557.2-201ENST00000605919 418 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 AC084824.4-201ENST00000620106 731 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 SNORD3E-202ENST00000627253 216 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 AC134026.1-201ENST00000623249 2239 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 MTND1P30-201ENST00000441241 901 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.05□□□□□ -2.4
USF3Q68DE3 AC098869.1-201ENST00000481627 292 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 MTCO2P15-201ENST00000532655 656 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 AL590229.1-201ENST00000603497 542 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 AL163051.2-201ENST00000618976 735 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 AC093648.1-201ENST00000623546 606 ntBASIC0.05□□□□□ -2.4
USF3Q68DE3 RNU6-223P-201ENST00000362830 107 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 RNU6-658P-201ENST00000384606 106 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 RNU6-700P-201ENST00000391043 107 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 TPMTP2-201ENST00000414372 726 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 RPS26P5-201ENST00000418544 335 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC0.04□□□□□ -2.4
USF3Q68DE3 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.04□□□□□ -2.4
USF3Q68DE3 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.04□□□□□ -2.4
USF3Q68DE3 RPL39P6-201ENST00000448289 150 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 RNU1-131P-201ENST00000458943 161 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 RPS26P48-201ENST00000491713 339 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.04□□□□□ -2.4
USF3Q68DE3 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 RNU2-53P-201ENST00000516257 147 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC0.04□□□□□ -2.4
USF3Q68DE3 BNIP3P30-201ENST00000601184 574 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 AC022022.2-201ENST00000602989 360 ntBASIC0.04□□□□□ -2.4
USF3Q68DE3 AC018926.1-201ENST00000616335 435 ntBASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms