Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 RNU6-701P-201ENST00000384059 107 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 Y_RNA.428-201ENST00000384078 102 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 UBE2V1P15-201ENST00000407776 448 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 RNU2-36P-201ENST00000410361 191 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 RNU6-77P-201ENST00000410554 91 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 RNA5SP451-201ENST00000410588 110 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 RNU2-42P-201ENST00000410697 113 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 RNU6-564P-201ENST00000410983 104 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 AL449283.1-202ENST00000418249 604 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.09□□□□□ -2.39
COL7A1Q02388 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC0.09□□□□□ -2.39
COL7A1Q02388 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC0.09□□□□□ -2.39
COL7A1Q02388 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC0.09□□□□□ -2.39
COL7A1Q02388 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.09□□□□□ -2.39
COL7A1Q02388 ZFAND6P1-201ENST00000434138 605 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 SNRPEP9-201ENST00000436794 238 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 RAD1P2-201ENST00000446414 663 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 MTND1P31-201ENST00000449206 961 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 PCNPP5-201ENST00000452246 481 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 snoU13.25-201ENST00000458945 104 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 RPL30P1-201ENST00000488676 339 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC0.09□□□□□ -2.39
COL7A1Q02388 RNU6-138P-201ENST00000515952 107 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 RNU6ATAC13P-201ENST00000516152 131 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC0.09□□□□□ -2.39
COL7A1Q02388 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC0.09□□□□□ -2.39
COL7A1Q02388 RAB11AP2-201ENST00000545905 639 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC0.09□□□□□ -2.39
COL7A1Q02388 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC0.09□□□□□ -2.39
COL7A1Q02388 AC005951.2-201ENST00000576282 495 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 AC026271.5-201ENST00000577873 130 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 MIR4666A-201ENST00000580160 79 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 MIR4637-201ENST00000582405 84 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 AL391813.1-201ENST00000603098 260 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 AC018889.1-201ENST00000605372 397 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.09□□□□□ -2.39
COL7A1Q02388 AP005229.2-201ENST00000609980 697 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 AC138627.2-201ENST00000624202 601 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 AC019226.1-201ENST00000625666 515 ntBASIC0.09□□□□□ -2.39
COL7A1Q02388 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.09□□□□□ -2.39
COL7A1Q02388 ZNF736P9Y-201ENST00000439586 1345 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 SNORD33-201ENST00000362761 85 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 RNU6-529P-201ENST00000363383 104 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 RNU6-777P-201ENST00000364265 104 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 Y_RNA.403-201ENST00000383977 101 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 RNU6-932P-201ENST00000391108 106 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC0.09□□□□□ -2.4
COL7A1Q02388 TAF9BP2-201ENST00000400856 499 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AL603865.2-201ENST00000401679 213 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC004866.1-201ENST00000411748 78 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC092634.6-201ENST00000418558 192 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AL451054.2-201ENST00000420896 202 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC0.09□□□□□ -2.4
COL7A1Q02388 AC011233.1-201ENST00000422812 283 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.09□□□□□ -2.4
COL7A1Q02388 AC244023.1-201ENST00000426884 112 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 ELOCP14-201ENST00000428070 331 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC0.09□□□□□ -2.4
COL7A1Q02388 CETN4P-201ENST00000432407 469 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC010153.1-201ENST00000432862 727 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AL714022.1-201ENST00000439897 151 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 ELOCP7-201ENST00000439968 331 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC0.09□□□□□ -2.4
COL7A1Q02388 MTND2P4-201ENST00000445034 1004 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 MTCO1P27-201ENST00000448269 226 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC0.09□□□□□ -2.4
COL7A1Q02388 HMGN3P1-201ENST00000453847 193 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 LINC01399-202ENST00000458450 244 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC116337.2-201ENST00000477662 156 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.09□□□□□ -2.4
COL7A1Q02388 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.09□□□□□ -2.4
COL7A1Q02388 MTCO1P31-201ENST00000506355 492 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC011406.1-201ENST00000512440 370 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 RNU6-488P-201ENST00000515918 99 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC0.09□□□□□ -2.4
COL7A1Q02388 AC087897.1-201ENST00000550134 156 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC0.09□□□□□ -2.4
COL7A1Q02388 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.09□□□□□ -2.4
COL7A1Q02388 HMGB1P33-201ENST00000563485 527 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.09□□□□□ -2.4
COL7A1Q02388 MIR3937-201ENST00000580135 106 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AF038458.1-201ENST00000588406 262 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 RPL30P11-203ENST00000598995 310 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 Z99497.2-201ENST00000603634 310 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC242498.1-201ENST00000604134 111 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC090578.1-201ENST00000604955 591 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AL158211.4-201ENST00000606988 584 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC239868.4-201ENST00000608318 671 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC069294.1-201ENST00000608397 350 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 UBE2Q2P6-201ENST00000612666 153 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 AC243994.1-201ENST00000618627 109 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 MIR6755-201ENST00000619993 66 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 7SK.10-201ENST00000621414 298 ntBASIC0.09□□□□□ -2.4
COL7A1Q02388 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
COL7A1Q02388 RNU5E-1-201ENST00000362477 120 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 SNORD114-28-201ENST00000363610 72 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 RNU6-878P-201ENST00000384578 110 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 MIR608-201ENST00000384820 100 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 RNA5SP219-201ENST00000390940 113 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 TMSB4XP8-201ENST00000402089 135 ntBASIC0.08□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms