Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MIR6895-201ENST00000613497 78 ntBASIC2.17□□□□□ -2.06
CDX1P47902 SNORD98-201ENST00000636377 67 ntBASIC2.17□□□□□ -2.06
CDX1P47902 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
CDX1P47902 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CDX1P47902 Y_RNA.167-201ENST00000363735 109 ntBASIC2.16□□□□□ -2.06
CDX1P47902 RNU4-56P-201ENST00000364700 142 ntBASIC2.16□□□□□ -2.06
CDX1P47902 RNU1-148P-201ENST00000384472 162 ntBASIC2.16□□□□□ -2.06
CDX1P47902 RNA5SP21-201ENST00000410917 96 ntBASIC2.16□□□□□ -2.06
CDX1P47902 RNU2-32P-201ENST00000411193 191 ntBASIC2.16□□□□□ -2.06
CDX1P47902 RNU6-373P-201ENST00000411247 98 ntBASIC2.16□□□□□ -2.06
CDX1P47902 SNRPEP10-201ENST00000420249 274 ntBASIC2.16□□□□□ -2.06
CDX1P47902 USP9YP18-201ENST00000425912 695 ntBASIC2.16□□□□□ -2.06
CDX1P47902 AC063976.3-201ENST00000426849 329 ntBASIC2.16□□□□□ -2.06
CDX1P47902 AC078809.1-201ENST00000427601 140 ntBASIC2.16□□□□□ -2.06
CDX1P47902 SRIP2-201ENST00000428470 166 ntBASIC2.16□□□□□ -2.06
CDX1P47902 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.16□□□□□ -2.06
CDX1P47902 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.16□□□□□ -2.06
CDX1P47902 RPS3P1-201ENST00000456781 192 ntBASIC2.16□□□□□ -2.06
CDX1P47902 RPL9P9-202ENST00000466501 579 ntBASIC2.16□□□□□ -2.06
CDX1P47902 AC092989.1-201ENST00000481235 277 ntBASIC2.16□□□□□ -2.06
CDX1P47902 HMGB1P35-201ENST00000503360 598 ntBASIC2.16□□□□□ -2.06
CDX1P47902 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.16□□□□□ -2.06
CDX1P47902 AC092436.3-201ENST00000511788 257 ntBASIC2.16□□□□□ -2.06
CDX1P47902 RPL39P5-202ENST00000512505 151 ntBASIC2.16□□□□□ -2.06
CDX1P47902 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.16□□□□□ -2.06
CDX1P47902 SNORA4.4-201ENST00000515921 135 ntBASIC2.16□□□□□ -2.06
CDX1P47902 RN7SKP256-201ENST00000517201 314 ntBASIC2.16□□□□□ -2.06
CDX1P47902 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.16□□□□□ -2.06
CDX1P47902 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.16□□□□□ -2.06
CDX1P47902 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.16□□□□□ -2.06
CDX1P47902 AP001836.1-201ENST00000604675 523 ntBASIC2.16□□□□□ -2.06
CDX1P47902 AC090517.2-201ENST00000614966 680 ntBASIC2.16□□□□□ -2.06
CDX1P47902 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.16□□□□□ -2.06
CDX1P47902 AC092593.1-201ENST00000515413 1815 ntBASIC2.16□□□□□ -2.06
CDX1P47902 AC007336.1-201ENST00000576365 3828 ntBASIC2.15□□□□□ -2.06
CDX1P47902 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
CDX1P47902 Y_RNA.89-201ENST00000363031 102 ntBASIC2.15□□□□□ -2.07
CDX1P47902 Y_RNA.256-201ENST00000364594 104 ntBASIC2.15□□□□□ -2.07
CDX1P47902 Y_RNA.295-201ENST00000364918 102 ntBASIC2.15□□□□□ -2.07
CDX1P47902 RNU6-546P-201ENST00000383991 107 ntBASIC2.15□□□□□ -2.07
CDX1P47902 Y_RNA.504-201ENST00000384481 104 ntBASIC2.15□□□□□ -2.07
CDX1P47902 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
CDX1P47902 BTF3L4P2-201ENST00000392798 346 ntBASIC2.15□□□□□ -2.07
CDX1P47902 AL360182.1-201ENST00000397433 468 ntBASIC2.15□□□□□ -2.07
CDX1P47902 AL138827.1-201ENST00000402666 306 ntBASIC2.15□□□□□ -2.07
CDX1P47902 MIR548F1-201ENST00000408667 84 ntBASIC2.15□□□□□ -2.07
CDX1P47902 Y_RNA.597-201ENST00000410463 100 ntBASIC2.15□□□□□ -2.07
CDX1P47902 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.15□□□□□ -2.07
CDX1P47902 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.15□□□□□ -2.07
CDX1P47902 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.15□□□□□ -2.07
CDX1P47902 NDUFA5P4-201ENST00000436704 385 ntBASIC2.15□□□□□ -2.07
CDX1P47902 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.15□□□□□ -2.07
CDX1P47902 RPL32P28-201ENST00000443577 397 ntBASIC2.15□□□□□ -2.07
CDX1P47902 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.15□□□□□ -2.07
CDX1P47902 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.15□□□□□ -2.07
CDX1P47902 SNORA59A-201ENST00000459326 152 ntBASIC2.15□□□□□ -2.07
CDX1P47902 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.15□□□□□ -2.07
CDX1P47902 AC016632.1-201ENST00000503994 196 ntBASIC2.15□□□□□ -2.07
CDX1P47902 HMGB3P3-201ENST00000510526 400 ntBASIC2.15□□□□□ -2.07
CDX1P47902 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.15□□□□□ -2.07
CDX1P47902 RN7SKP132-201ENST00000516001 208 ntBASIC2.15□□□□□ -2.07
CDX1P47902 RNU6-718P-201ENST00000516166 105 ntBASIC2.15□□□□□ -2.07
CDX1P47902 Y_RNA.665-201ENST00000516177 98 ntBASIC2.15□□□□□ -2.07
CDX1P47902 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.15□□□□□ -2.07
CDX1P47902 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.15□□□□□ -2.07
CDX1P47902 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.15□□□□□ -2.07
CDX1P47902 MIR3136-201ENST00000583498 78 ntBASIC2.15□□□□□ -2.07
CDX1P47902 ZNF861P-201ENST00000588126 639 ntBASIC2.15□□□□□ -2.07
CDX1P47902 BNIP3P25-201ENST00000596023 559 ntBASIC2.15□□□□□ -2.07
CDX1P47902 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.15□□□□□ -2.07
CDX1P47902 AL034555.1-201ENST00000604816 211 ntBASIC2.15□□□□□ -2.07
CDX1P47902 AC098679.4-201ENST00000624241 654 ntBASIC2.15□□□□□ -2.07
CDX1P47902 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.15□□□□□ -2.07
CDX1P47902 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.15□□□□□ -2.07
CDX1P47902 AC069528.2-201ENST00000624849 1991 ntBASIC2.15□□□□□ -2.07
CDX1P47902 AP000560.1-201ENST00000624150 1937 ntBASIC2.15□□□□□ -2.07
CDX1P47902 MTND4P23-201ENST00000447723 1363 ntBASIC2.14□□□□□ -2.07
CDX1P47902 RNU6-1252P-201ENST00000363054 104 ntBASIC2.14□□□□□ -2.07
CDX1P47902 RNU6-254P-201ENST00000363377 107 ntBASIC2.14□□□□□ -2.07
CDX1P47902 SNORD113-7-201ENST00000363762 77 ntBASIC2.14□□□□□ -2.07
CDX1P47902 RNU6-944P-201ENST00000364023 107 ntBASIC2.14□□□□□ -2.07
CDX1P47902 SNORA3A-201ENST00000364113 130 ntBASIC2.14□□□□□ -2.07
CDX1P47902 SNORD32A-201ENST00000364805 84 ntBASIC2.14□□□□□ -2.07
CDX1P47902 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CDX1P47902 Y_RNA.500-201ENST00000384466 111 ntBASIC2.14□□□□□ -2.07
CDX1P47902 RNA5SP270-201ENST00000411361 118 ntBASIC2.14□□□□□ -2.07
CDX1P47902 AP000275.1-201ENST00000411943 390 ntBASIC2.14□□□□□ -2.07
CDX1P47902 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.14□□□□□ -2.07
CDX1P47902 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.14□□□□□ -2.07
CDX1P47902 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.14□□□□□ -2.07
CDX1P47902 AMD1P1-201ENST00000457220 922 ntBASIC2.14□□□□□ -2.07
CDX1P47902 U8.21-201ENST00000459536 136 ntBASIC2.14□□□□□ -2.07
CDX1P47902 RNU6-612P-201ENST00000516909 102 ntBASIC2.14□□□□□ -2.07
CDX1P47902 MTND1P5-201ENST00000517906 940 ntBASIC2.14□□□□□ -2.07
CDX1P47902 AC026371.1-201ENST00000551867 419 ntBASIC2.14□□□□□ -2.07
CDX1P47902 MIR3162-201ENST00000581818 82 ntBASIC2.14□□□□□ -2.07
CDX1P47902 RMST_3.1-201ENST00000611651 109 ntBASIC2.14□□□□□ -2.07
CDX1P47902 AL161423.1-201ENST00000613700 262 ntBASIC2.14□□□□□ -2.07
CDX1P47902 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.14□□□□□ -2.07
CDX1P47902 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms