Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 MTCO2P3-201ENST00000442543 421 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 UBBP3-201ENST00000445497 241 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.76□□□□□ -1.97
SHMT1P34896 AC013470.1-201ENST00000453438 462 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 AIG1P1-201ENST00000503376 148 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.76□□□□□ -1.97
SHMT1P34896 RNU7-30P-201ENST00000516835 62 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 Y_RNA.702-201ENST00000516843 96 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.76□□□□□ -1.97
SHMT1P34896 ELOCP31-201ENST00000540463 467 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 AC026464.5-201ENST00000562497 722 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 AC005668.1-201ENST00000571142 476 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.76□□□□□ -1.97
SHMT1P34896 AC008739.2-201ENST00000597006 317 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.76□□□□□ -1.97
SHMT1P34896 AL355073.2-201ENST00000612106 557 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.76□□□□□ -1.97
SHMT1P34896 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.76□□□□□ -1.97
SHMT1P34896 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
SHMT1P34896 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 RNU6-827P-201ENST00000365553 106 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 SNORD116-11-201ENST00000383882 92 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 SNORD73A-201ENST00000386062 65 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 AL117339.3-201ENST00000418733 162 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 AL356320.1-201ENST00000429616 163 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 AL591043.1-201ENST00000432461 424 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 RPS15AP10-201ENST00000432472 382 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 SNAP23P1-201ENST00000433229 246 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 AC124916.1-201ENST00000444020 547 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.75□□□□□ -1.97
SHMT1P34896 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.75□□□□□ -1.97
SHMT1P34896 RNU6-1037P-201ENST00000459571 107 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 RPL31P41-201ENST00000477967 372 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 RPL23AP49-201ENST00000492925 468 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 YWHAEP4-201ENST00000505390 198 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 AC092436.3-201ENST00000511788 257 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.75□□□□□ -1.97
SHMT1P34896 RNU5B-3P-201ENST00000516601 115 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.75□□□□□ -1.97
SHMT1P34896 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.75□□□□□ -1.97
SHMT1P34896 MIR5007-201ENST00000583098 95 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 RNU6-91P-201ENST00000607774 107 ntBASIC2.75□□□□□ -1.97
SHMT1P34896 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
SHMT1P34896 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
SHMT1P34896 MTND4P12-201ENST00000498999 1377 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.74□□□□□ -1.97
SHMT1P34896 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.74□□□□□ -1.97
SHMT1P34896 MIR21-201ENST00000362134 72 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 RNU6-562P-201ENST00000362731 107 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 Y_RNA.135-201ENST00000363439 95 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 RNU6-843P-201ENST00000384454 104 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 FO393413.1-201ENST00000402892 195 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 AL135786.1-201ENST00000415892 214 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 AC074117.2-201ENST00000417130 397 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 NCOR1P3-201ENST00000420479 303 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 AL645568.3-201ENST00000433683 316 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 AC010095.1-201ENST00000443543 144 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.74□□□□□ -1.97
SHMT1P34896 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.74□□□□□ -1.97
SHMT1P34896 AK3P2-201ENST00000507976 429 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 AC008526.1-201ENST00000509149 338 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 AC096745.1-201ENST00000509945 370 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 RNU6-566P-201ENST00000516790 107 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
SHMT1P34896 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.74□□□□□ -1.97
SHMT1P34896 ELOCP5-201ENST00000604924 333 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 uc_338.5-201ENST00000611839 155 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 uc_338.14-201ENST00000613162 166 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.74□□□□□ -1.97
SHMT1P34896 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.74□□□□□ -1.97
SHMT1P34896 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
SHMT1P34896 AC026241.1-201ENST00000517873 2142 ntBASIC2.74□□□□□ -1.97
SHMT1P34896 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
SHMT1P34896 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SHMT1P34896 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SHMT1P34896 SNORD81.2-201ENST00000365153 76 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 RNU6-487P-201ENST00000365430 104 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 RNU2-25P-201ENST00000411041 191 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 AL139396.1-201ENST00000421137 167 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 USP9YP8-201ENST00000441913 500 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.73□□□□□ -1.97
SHMT1P34896 MTCO1P29-201ENST00000496868 288 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.73□□□□□ -1.97
SHMT1P34896 MRPS36P2-201ENST00000512569 299 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 RNU6-1088P-201ENST00000516850 104 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 RNU6-273P-201ENST00000516937 96 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 AC104576.1-201ENST00000524225 88 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.73□□□□□ -1.97
SHMT1P34896 SCOCP1-201ENST00000554676 349 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 MIR1273D-201ENST00000577266 86 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.73□□□□□ -1.97
SHMT1P34896 VN1R107P-201ENST00000601784 209 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.73□□□□□ -1.97
SHMT1P34896 AC064836.2-201ENST00000609491 462 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 AC025253.1-201ENST00000613623 543 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 uc_338.15-201ENST00000615470 191 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 AC138627.2-201ENST00000624202 601 ntBASIC2.73□□□□□ -1.97
SHMT1P34896 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.73□□□□□ -1.97
SHMT1P34896 RNU6-105P-201ENST00000363909 104 ntBASIC2.72□□□□□ -1.97
SHMT1P34896 RPS29P13-201ENST00000402041 169 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 138.4 ms