Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CIITAP33076 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.02□□□□□ -1.93
CIITAP33076 TRAV32-201ENST00000553993 340 ntBASIC3.02□□□□□ -1.93
CIITAP33076 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.02□□□□□ -1.93
CIITAP33076 AC010620.2-201ENST00000600135 313 ntBASIC3.02□□□□□ -1.93
CIITAP33076 AL121917.1-203ENST00000605534 577 ntBASIC3.02□□□□□ -1.93
CIITAP33076 AL080274.1-201ENST00000605565 220 ntBASIC3.02□□□□□ -1.93
CIITAP33076 MIR1302-2-201ENST00000607096 138 ntBASIC3.02□□□□□ -1.93
CIITAP33076 UCA1.1-201ENST00000620952 75 ntBASIC3.02□□□□□ -1.93
CIITAP33076 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CIITAP33076 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
CIITAP33076 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.02□□□□□ -1.93
CIITAP33076 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.02□□□□□ -1.93
CIITAP33076 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CIITAP33076 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CIITAP33076 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.01□□□□□ -1.93
CIITAP33076 MIR369-201ENST00000362155 70 ntBASIC3.01□□□□□ -1.93
CIITAP33076 RNU6-1059P-201ENST00000363752 98 ntBASIC3.01□□□□□ -1.93
CIITAP33076 Y_RNA.187-201ENST00000363918 113 ntBASIC3.01□□□□□ -1.93
CIITAP33076 RNU6-842P-201ENST00000384269 107 ntBASIC3.01□□□□□ -1.93
CIITAP33076 RNU6-72P-201ENST00000384285 79 ntBASIC3.01□□□□□ -1.93
CIITAP33076 MIR34A-201ENST00000385130 110 ntBASIC3.01□□□□□ -1.93
CIITAP33076 SNORA75.4-201ENST00000391278 119 ntBASIC3.01□□□□□ -1.93
CIITAP33076 SNORA26.7-201ENST00000391288 122 ntBASIC3.01□□□□□ -1.93
CIITAP33076 AL445529.1-201ENST00000398713 389 ntBASIC3.01□□□□□ -1.93
CIITAP33076 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.01□□□□□ -1.93
CIITAP33076 AL512633.1-201ENST00000399931 655 ntBASIC3.01□□□□□ -1.93
CIITAP33076 Y_RNA.594-201ENST00000410373 140 ntBASIC3.01□□□□□ -1.93
CIITAP33076 AL030996.1-201ENST00000411430 235 ntBASIC3.01□□□□□ -1.93
CIITAP33076 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.01□□□□□ -1.93
CIITAP33076 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.01□□□□□ -1.93
CIITAP33076 AL117339.3-201ENST00000418733 162 ntBASIC3.01□□□□□ -1.93
CIITAP33076 AL353729.1-201ENST00000425044 720 ntBASIC3.01□□□□□ -1.93
CIITAP33076 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.01□□□□□ -1.93
CIITAP33076 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.01□□□□□ -1.93
CIITAP33076 AC013470.1-201ENST00000453438 462 ntBASIC3.01□□□□□ -1.93
CIITAP33076 RPS27AP10-201ENST00000496103 208 ntBASIC3.01□□□□□ -1.93
CIITAP33076 Y_RNA.687-201ENST00000516558 91 ntBASIC3.01□□□□□ -1.93
CIITAP33076 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.01□□□□□ -1.93
CIITAP33076 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.01□□□□□ -1.93
CIITAP33076 CPDP1-201ENST00000579660 283 ntBASIC3.01□□□□□ -1.93
CIITAP33076 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CIITAP33076 AC009229.3-201ENST00000608056 282 ntBASIC3.01□□□□□ -1.93
CIITAP33076 AC107871.2-201ENST00000612894 502 ntBASIC3.01□□□□□ -1.93
CIITAP33076 AC244517.12-201ENST00000623581 663 ntBASIC3.01□□□□□ -1.93
CIITAP33076 AL669831.3-213ENST00000636676 183 ntBASIC3.01□□□□□ -1.93
CIITAP33076 AC110491.1-201ENST00000562191 2010 ntBASIC3.01□□□□□ -1.93
CIITAP33076 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.01□□□□□ -1.93
CIITAP33076 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CIITAP33076 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CIITAP33076 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
CIITAP33076 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CIITAP33076 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CIITAP33076 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3□□□□□ -1.93
CIITAP33076 Y_RNA.395-201ENST00000383945 109 ntBASIC3□□□□□ -1.93
CIITAP33076 SNORD21-201ENST00000383953 95 ntBASIC3□□□□□ -1.93
CIITAP33076 RNU6-1050P-201ENST00000410388 107 ntBASIC3□□□□□ -1.93
CIITAP33076 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3□□□□□ -1.93
CIITAP33076 RPL7P42-201ENST00000481005 679 ntBASIC3□□□□□ -1.93
CIITAP33076 MTCYBP40-201ENST00000509390 1135 ntBASIC3□□□□□ -1.93
CIITAP33076 PTP4A1P4-201ENST00000512479 322 ntBASIC3□□□□□ -1.93
CIITAP33076 AC093303.1-201ENST00000514549 295 ntBASIC3□□□□□ -1.93
CIITAP33076 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3□□□□□ -1.93
CIITAP33076 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3□□□□□ -1.93
CIITAP33076 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3□□□□□ -1.93
CIITAP33076 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3□□□□□ -1.93
CIITAP33076 MIR4672-201ENST00000583126 81 ntBASIC3□□□□□ -1.93
CIITAP33076 HMGN2P15-201ENST00000585707 270 ntBASIC3□□□□□ -1.93
CIITAP33076 AC011494.1-201ENST00000596454 237 ntBASIC3□□□□□ -1.93
CIITAP33076 SNRPGP17-201ENST00000603780 214 ntBASIC3□□□□□ -1.93
CIITAP33076 AC019159.1-201ENST00000605094 187 ntBASIC3□□□□□ -1.93
CIITAP33076 AC080078.3-201ENST00000605407 463 ntBASIC3□□□□□ -1.93
CIITAP33076 MIR6733-201ENST00000635723 61 ntBASIC3□□□□□ -1.93
CIITAP33076 U6.99-201ENST00000637524 83 ntBASIC3□□□□□ -1.93
CIITAP33076 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3□□□□□ -1.93
CIITAP33076 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3□□□□□ -1.93
CIITAP33076 RNU6-942P-201ENST00000363002 107 ntBASIC2.99□□□□□ -1.93
CIITAP33076 RNU6-658P-201ENST00000384606 106 ntBASIC2.99□□□□□ -1.93
CIITAP33076 MIR517A-201ENST00000385001 87 ntBASIC2.99□□□□□ -1.93
CIITAP33076 Z82205.1-201ENST00000428456 297 ntBASIC2.99□□□□□ -1.93
CIITAP33076 RPS15AP5-201ENST00000436276 388 ntBASIC2.99□□□□□ -1.93
CIITAP33076 AC096725.1-201ENST00000514266 313 ntBASIC2.99□□□□□ -1.93
CIITAP33076 AP003072.1-201ENST00000531740 145 ntBASIC2.99□□□□□ -1.93
CIITAP33076 CBX3P7-201ENST00000532876 502 ntBASIC2.99□□□□□ -1.93
CIITAP33076 ELOCP31-201ENST00000540463 467 ntBASIC2.99□□□□□ -1.93
CIITAP33076 MIR4782-201ENST00000577987 79 ntBASIC2.99□□□□□ -1.93
CIITAP33076 MIR3124-201ENST00000582636 67 ntBASIC2.99□□□□□ -1.93
CIITAP33076 MIR5690-201ENST00000583739 73 ntBASIC2.99□□□□□ -1.93
CIITAP33076 RPL12P50-201ENST00000603116 116 ntBASIC2.99□□□□□ -1.93
CIITAP33076 MTND4LP5-201ENST00000605152 292 ntBASIC2.99□□□□□ -1.93
CIITAP33076 AL133215.3-201ENST00000609801 448 ntBASIC2.99□□□□□ -1.93
CIITAP33076 AC090971.5-201ENST00000621102 293 ntBASIC2.99□□□□□ -1.93
CIITAP33076 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
CIITAP33076 AC134503.1-201ENST00000633048 54 ntBASIC2.99□□□□□ -1.93
CIITAP33076 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.99□□□□□ -1.93
CIITAP33076 RNU6-428P-201ENST00000362942 107 ntBASIC2.98□□□□□ -1.93
CIITAP33076 Y_RNA.197-201ENST00000364004 102 ntBASIC2.98□□□□□ -1.93
CIITAP33076 RNU6-827P-201ENST00000365553 106 ntBASIC2.98□□□□□ -1.93
CIITAP33076 RNU6-898P-201ENST00000365627 104 ntBASIC2.98□□□□□ -1.93
CIITAP33076 SNORD88.1-201ENST00000408684 91 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms