Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC4.23□□□□□ -1.73
ERCC3P19447 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC4.23□□□□□ -1.73
ERCC3P19447 AC016256.1-201ENST00000547971 354 ntBASIC4.23□□□□□ -1.73
ERCC3P19447 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.23□□□□□ -1.73
ERCC3P19447 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC4.23□□□□□ -1.73
ERCC3P19447 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.23□□□□□ -1.73
ERCC3P19447 AL137849.1-201ENST00000604767 169 ntBASIC4.23□□□□□ -1.73
ERCC3P19447 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.23□□□□□ -1.73
ERCC3P19447 AL049781.1-201ENST00000623195 3585 ntBASIC4.23□□□□□ -1.73
ERCC3P19447 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC4.23□□□□□ -1.73
ERCC3P19447 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
ERCC3P19447 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
ERCC3P19447 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
ERCC3P19447 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
ERCC3P19447 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
ERCC3P19447 RNU1-18P-201ENST00000363062 164 ntBASIC4.22□□□□□ -1.73
ERCC3P19447 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
ERCC3P19447 AC012306.1-201ENST00000423267 114 ntBASIC4.22□□□□□ -1.73
ERCC3P19447 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.22□□□□□ -1.73
ERCC3P19447 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC4.22□□□□□ -1.73
ERCC3P19447 MIR5571-201ENST00000577998 113 ntBASIC4.22□□□□□ -1.73
ERCC3P19447 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.22□□□□□ -1.73
ERCC3P19447 Z98751.3-201ENST00000604447 521 ntBASIC4.22□□□□□ -1.73
ERCC3P19447 AL162713.1-201ENST00000604480 262 ntBASIC4.22□□□□□ -1.73
ERCC3P19447 BRDTP1-201ENST00000605735 677 ntBASIC4.22□□□□□ -1.73
ERCC3P19447 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
ERCC3P19447 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
ERCC3P19447 Z75746.1-201ENST00000440243 2080 ntBASIC4.22□□□□□ -1.73
ERCC3P19447 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.21□□□□□ -1.73
ERCC3P19447 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.73
ERCC3P19447 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.21□□□□□ -1.74
ERCC3P19447 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.21□□□□□ -1.74
ERCC3P19447 RNU6-1010P-201ENST00000362757 107 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 RNU5B-2P-201ENST00000363036 113 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 RNA5SP50-201ENST00000363731 107 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 RNU6-879P-201ENST00000364328 108 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 RNU6-708P-201ENST00000384217 107 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 RNU6-17P-201ENST00000384245 107 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 RNU6-18P-201ENST00000384527 107 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 AL358176.2-201ENST00000425769 204 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.21□□□□□ -1.74
ERCC3P19447 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.21□□□□□ -1.74
ERCC3P19447 U8.20-201ENST00000459445 131 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 TRBV12-2-201ENST00000489763 344 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 MRPS35P2-201ENST00000508242 191 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC4.21□□□□□ -1.74
ERCC3P19447 RNU6-567P-201ENST00000516746 107 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 AC131281.1-201ENST00000522984 164 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 AL117187.1-201ENST00000555482 181 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 AC090617.3-201ENST00000573670 475 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC4.21□□□□□ -1.74
ERCC3P19447 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC4.21□□□□□ -1.74
ERCC3P19447 AL138963.2-201ENST00000605137 226 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.21□□□□□ -1.74
ERCC3P19447 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
ERCC3P19447 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
ERCC3P19447 AP000560.1-201ENST00000624150 1937 ntBASIC4.21□□□□□ -1.74
ERCC3P19447 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
ERCC3P19447 AC103988.1-201ENST00000566382 2177 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 AL109809.4-201ENST00000603520 2185 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
ERCC3P19447 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
ERCC3P19447 AL359854.1-201ENST00000614203 1594 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.2□□□□□ -1.74
ERCC3P19447 Y_RNA.144-201ENST00000363521 113 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 Y_RNA.153-201ENST00000363615 91 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 SNORD115-32-201ENST00000364079 82 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 Y_RNA.210-201ENST00000364161 110 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 RNU4-50P-201ENST00000364361 141 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 Y_RNA.319-201ENST00000365138 92 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 RNU6-26P-201ENST00000383985 107 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 MIR186-201ENST00000384988 86 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 MIR487A-201ENST00000385009 80 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 MIR208B-201ENST00000401172 77 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC4.2□□□□□ -1.74
ERCC3P19447 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC4.2□□□□□ -1.74
ERCC3P19447 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4.2□□□□□ -1.74
ERCC3P19447 BX510359.1-201ENST00000456973 237 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 U8.22-201ENST00000459141 133 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 AP000870.1-201ENST00000472927 406 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.2□□□□□ -1.74
ERCC3P19447 RNU5F-2P-201ENST00000516066 82 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 RNU6-397P-201ENST00000516226 104 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 SNORA31.6-201ENST00000516241 130 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 SNORA70.18-201ENST00000516696 98 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 Y_RNA.715-201ENST00000517082 110 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 AC008011.1-201ENST00000545989 227 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC4.2□□□□□ -1.74
ERCC3P19447 MIR3136-201ENST00000583498 78 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 AL390123.1-201ENST00000603216 237 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 AP000942.4-201ENST00000604811 241 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 AC107294.3-201ENST00000609211 526 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.2□□□□□ -1.74
ERCC3P19447 AC243829.7-201ENST00000633081 225 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 AP000553.6-201ENST00000641242 118 ntBASIC4.2□□□□□ -1.74
ERCC3P19447 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
ERCC3P19447 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.2□□□□□ -1.74
ERCC3P19447 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
ERCC3P19447 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
ERCC3P19447 AC073073.2-201ENST00000609827 2578 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms