Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RNU6-1274P-201ENST00000384557 107 ntBASIC2.27□□□□□ -2.05
SIX3O95343 MIR95-201ENST00000385072 81 ntBASIC2.27□□□□□ -2.05
SIX3O95343 RNU2-16P-201ENST00000410712 136 ntBASIC2.27□□□□□ -2.05
SIX3O95343 MORF4L1P6-201ENST00000418771 268 ntBASIC2.27□□□□□ -2.05
SIX3O95343 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
SIX3O95343 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.27□□□□□ -2.05
SIX3O95343 AC016691.1-201ENST00000441321 413 ntBASIC2.27□□□□□ -2.05
SIX3O95343 AC007969.2-201ENST00000441891 191 ntBASIC2.27□□□□□ -2.05
SIX3O95343 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.27□□□□□ -2.05
SIX3O95343 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.27□□□□□ -2.05
SIX3O95343 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.27□□□□□ -2.05
SIX3O95343 RNU7-180P-201ENST00000459240 63 ntBASIC2.27□□□□□ -2.05
SIX3O95343 RPL30P1-201ENST00000488676 339 ntBASIC2.27□□□□□ -2.05
SIX3O95343 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.27□□□□□ -2.05
SIX3O95343 RNU7-193P-201ENST00000516723 65 ntBASIC2.27□□□□□ -2.05
SIX3O95343 SNORA25.17-201ENST00000517184 124 ntBASIC2.27□□□□□ -2.05
SIX3O95343 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.27□□□□□ -2.05
SIX3O95343 AC087241.2-201ENST00000535801 324 ntBASIC2.27□□□□□ -2.05
SIX3O95343 AP000763.2-201ENST00000540641 163 ntBASIC2.27□□□□□ -2.05
SIX3O95343 AC103987.3-201ENST00000582071 292 ntBASIC2.27□□□□□ -2.05
SIX3O95343 AL031274.2-201ENST00000599419 203 ntBASIC2.27□□□□□ -2.05
SIX3O95343 AP001596.2-201ENST00000608410 312 ntBASIC2.27□□□□□ -2.05
SIX3O95343 AC063943.3-201ENST00000615562 356 ntBASIC2.27□□□□□ -2.05
SIX3O95343 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
SIX3O95343 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
SIX3O95343 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
SIX3O95343 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
SIX3O95343 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
SIX3O95343 RNU4-56P-201ENST00000364700 142 ntBASIC2.26□□□□□ -2.05
SIX3O95343 RNU6-336P-201ENST00000364891 107 ntBASIC2.26□□□□□ -2.05
SIX3O95343 RNU6-546P-201ENST00000383991 107 ntBASIC2.26□□□□□ -2.05
SIX3O95343 Y_RNA.540-201ENST00000384638 111 ntBASIC2.26□□□□□ -2.05
SIX3O95343 MIR499A-201ENST00000384903 122 ntBASIC2.26□□□□□ -2.05
SIX3O95343 RPL21P1-201ENST00000399532 476 ntBASIC2.26□□□□□ -2.05
SIX3O95343 HMGB3P2-201ENST00000411913 584 ntBASIC2.26□□□□□ -2.05
SIX3O95343 EDDM3CP-201ENST00000415977 425 ntBASIC2.26□□□□□ -2.05
SIX3O95343 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.26□□□□□ -2.05
SIX3O95343 HMGN2P23-201ENST00000456759 269 ntBASIC2.26□□□□□ -2.05
SIX3O95343 snoU13.14-201ENST00000459372 104 ntBASIC2.26□□□□□ -2.05
SIX3O95343 RNU6-261P-201ENST00000459506 102 ntBASIC2.26□□□□□ -2.05
SIX3O95343 AC234781.5-201ENST00000508429 271 ntBASIC2.26□□□□□ -2.05
SIX3O95343 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.26□□□□□ -2.05
SIX3O95343 SNORA40.12-201ENST00000516329 111 ntBASIC2.26□□□□□ -2.05
SIX3O95343 RNU6-667P-201ENST00000517186 102 ntBASIC2.26□□□□□ -2.05
SIX3O95343 AC103996.1-201ENST00000555468 102 ntBASIC2.26□□□□□ -2.05
SIX3O95343 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.26□□□□□ -2.05
SIX3O95343 AC009127.3-201ENST00000570531 403 ntBASIC2.26□□□□□ -2.05
SIX3O95343 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.26□□□□□ -2.05
SIX3O95343 AP000942.3-201ENST00000603702 160 ntBASIC2.26□□□□□ -2.05
SIX3O95343 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
SIX3O95343 AC004492.1-201ENST00000607036 742 ntBASIC2.26□□□□□ -2.05
SIX3O95343 AC012640.5-201ENST00000623897 319 ntBASIC2.26□□□□□ -2.05
SIX3O95343 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
SIX3O95343 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
SIX3O95343 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
SIX3O95343 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
SIX3O95343 SNORD115-3-201ENST00000363100 82 ntBASIC2.25□□□□□ -2.05
SIX3O95343 MTCO3P40-201ENST00000392516 676 ntBASIC2.25□□□□□ -2.05
SIX3O95343 SNORD23.1-201ENST00000408212 104 ntBASIC2.25□□□□□ -2.05
SIX3O95343 Y_RNA.595-201ENST00000410403 105 ntBASIC2.25□□□□□ -2.05
SIX3O95343 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.25□□□□□ -2.05
SIX3O95343 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.25□□□□□ -2.05
SIX3O95343 AC010975.2-201ENST00000427781 588 ntBASIC2.25□□□□□ -2.05
SIX3O95343 AC018634.1-201ENST00000437554 401 ntBASIC2.25□□□□□ -2.05
SIX3O95343 TPTE2P5-203ENST00000458118 728 ntBASIC2.25□□□□□ -2.05
SIX3O95343 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.25□□□□□ -2.05
SIX3O95343 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.25□□□□□ -2.05
SIX3O95343 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.25□□□□□ -2.05
SIX3O95343 MIR449C-201ENST00000516047 92 ntBASIC2.25□□□□□ -2.05
SIX3O95343 CYCSP27-201ENST00000527643 293 ntBASIC2.25□□□□□ -2.05
SIX3O95343 AC007375.1-201ENST00000554513 578 ntBASIC2.25□□□□□ -2.05
SIX3O95343 AC245505.1-201ENST00000556398 224 ntBASIC2.25□□□□□ -2.05
SIX3O95343 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.25□□□□□ -2.05
SIX3O95343 BNIP3P16-201ENST00000589779 534 ntBASIC2.25□□□□□ -2.05
SIX3O95343 AC007229.1-201ENST00000590455 412 ntBASIC2.25□□□□□ -2.05
SIX3O95343 AC017083.3-201ENST00000609955 700 ntBASIC2.25□□□□□ -2.05
SIX3O95343 HULC.1-201ENST00000612720 240 ntBASIC2.25□□□□□ -2.05
SIX3O95343 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.25□□□□□ -2.05
SIX3O95343 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
SIX3O95343 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
SIX3O95343 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
SIX3O95343 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.24□□□□□ -2.05
SIX3O95343 AC005336.3-201ENST00000623833 2679 ntBASIC2.24□□□□□ -2.05
SIX3O95343 RNU6-1159P-201ENST00000362933 107 ntBASIC2.24□□□□□ -2.05
SIX3O95343 RNU6-743P-201ENST00000364151 106 ntBASIC2.24□□□□□ -2.05
SIX3O95343 SNORA69-201ENST00000383895 132 ntBASIC2.24□□□□□ -2.05
SIX3O95343 SNORA80E-201ENST00000384744 137 ntBASIC2.24□□□□□ -2.05
SIX3O95343 RNA5SP425-201ENST00000410336 112 ntBASIC2.24□□□□□ -2.05
SIX3O95343 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.24□□□□□ -2.05
SIX3O95343 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.24□□□□□ -2.05
SIX3O95343 RPS15AP10-201ENST00000432472 382 ntBASIC2.24□□□□□ -2.05
SIX3O95343 AC243964.1-201ENST00000441814 261 ntBASIC2.24□□□□□ -2.05
SIX3O95343 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.24□□□□□ -2.05
SIX3O95343 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.24□□□□□ -2.05
SIX3O95343 MTCO3P38-201ENST00000468910 766 ntBASIC2.24□□□□□ -2.05
SIX3O95343 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.24□□□□□ -2.05
SIX3O95343 AC107032.1-201ENST00000485945 480 ntBASIC2.24□□□□□ -2.05
SIX3O95343 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.24□□□□□ -2.05
SIX3O95343 RNU6-189P-201ENST00000516120 101 ntBASIC2.24□□□□□ -2.05
SIX3O95343 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms