Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RNU6-38P-201ENST00000384085 107 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 RNA5SP219-201ENST00000390940 113 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 RPS29P13-201ENST00000402041 169 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 SNORA11.4-201ENST00000408823 129 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 RNU6-293P-201ENST00000411259 106 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 MTCO3P41-201ENST00000414801 328 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 MTCO2P7-201ENST00000446518 666 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 AL031274.1-201ENST00000450334 232 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 RNU6-333P-201ENST00000459117 107 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.89□□□□□ -1.95
NPHP1O15259 CENPUP1-201ENST00000526649 1202 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 CYCSP26-201ENST00000534107 320 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 AL118558.2-201ENST00000556294 238 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 AL138976.2-201ENST00000563989 694 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.89□□□□□ -1.95
NPHP1O15259 BNIP3P16-201ENST00000589779 534 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 VN1R80P-201ENST00000597126 338 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 AL137847.3-201ENST00000611521 109 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 AL353997.5-201ENST00000618886 171 ntBASIC2.89□□□□□ -1.95
NPHP1O15259 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.89□□□□□ -1.95
NPHP1O15259 RNU4-20P-201ENST00000365601 151 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 RNU6-1222P-201ENST00000384615 107 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 MIR561-201ENST00000385216 97 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 RNU6-648P-201ENST00000410190 107 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 SRIP2-201ENST00000428470 166 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 RPS15AP28-201ENST00000435088 386 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 AC009238.1-201ENST00000442165 424 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 AC009237.6-201ENST00000446969 424 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.88□□□□□ -1.95
NPHP1O15259 TPTE2P5-203ENST00000458118 728 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 RPL23AP42-201ENST00000471152 471 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 RPL30P1-201ENST00000488676 339 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 SNORA14.1-201ENST00000516113 141 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 SNRPGP18-201ENST00000553000 214 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 VN1R107P-201ENST00000601784 209 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 AC092954.2-201ENST00000609103 430 ntBASIC2.88□□□□□ -1.95
NPHP1O15259 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
NPHP1O15259 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
NPHP1O15259 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
NPHP1O15259 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.87□□□□□ -1.95
NPHP1O15259 RNU6-623P-201ENST00000363143 105 ntBASIC2.87□□□□□ -1.95
NPHP1O15259 RNU6-82P-201ENST00000363970 107 ntBASIC2.87□□□□□ -1.95
NPHP1O15259 RNU6-1274P-201ENST00000384557 107 ntBASIC2.87□□□□□ -1.95
NPHP1O15259 RNU6-780P-201ENST00000391030 104 ntBASIC2.87□□□□□ -1.95
NPHP1O15259 RNU6-1245P-201ENST00000411130 106 ntBASIC2.87□□□□□ -1.95
NPHP1O15259 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.87□□□□□ -1.95
NPHP1O15259 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.87□□□□□ -1.95
NPHP1O15259 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.87□□□□□ -1.95
NPHP1O15259 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.87□□□□□ -1.95
NPHP1O15259 AL353752.1-201ENST00000454946 260 ntBASIC2.87□□□□□ -1.95
NPHP1O15259 AC018868.1-201ENST00000491307 315 ntBASIC2.87□□□□□ -1.95
NPHP1O15259 AC116337.1-201ENST00000509680 687 ntBASIC2.87□□□□□ -1.95
NPHP1O15259 AL512360.1-201ENST00000555346 234 ntBASIC2.87□□□□□ -1.95
NPHP1O15259 AC245505.1-201ENST00000556398 224 ntBASIC2.87□□□□□ -1.95
NPHP1O15259 RNU6-85P-201ENST00000605989 107 ntBASIC2.87□□□□□ -1.95
NPHP1O15259 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.87□□□□□ -1.95
NPHP1O15259 AC090517.3-201ENST00000625170 141 ntBASIC2.87□□□□□ -1.95
NPHP1O15259 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
NPHP1O15259 RNU4-66P-201ENST00000365199 138 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 SNORA25B-201ENST00000365507 128 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 RNU6-827P-201ENST00000365553 106 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 RNU6-692P-201ENST00000384496 107 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 SNORA64-201ENST00000384674 134 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 MIR221-201ENST00000385135 110 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.86□□□□□ -1.95
NPHP1O15259 RNU6-189P-201ENST00000516120 101 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 RNU6-1038P-201ENST00000516516 104 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 RN7SKP256-201ENST00000517201 314 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.86□□□□□ -1.95
NPHP1O15259 AC103996.1-201ENST00000555468 102 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 AC009127.3-201ENST00000570531 403 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 AC025165.5-201ENST00000602802 578 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 AC107304.1-201ENST00000604229 296 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 AL670379.2-201ENST00000604983 252 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 AC015540.1-201ENST00000615828 501 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 AC103705.1-201ENST00000619013 241 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 AC099654.12-201ENST00000639868 649 ntBASIC2.86□□□□□ -1.95
NPHP1O15259 AC016717.2-201ENST00000609089 5141 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 ZNF271P-202ENST00000465539 1970 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
NPHP1O15259 MIR6073-201ENST00000352083 89 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 RNU6-1285P-201ENST00000363480 105 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 U3.13-201ENST00000364804 214 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 Y_RNA.378-201ENST00000365652 113 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 MIR144-201ENST00000384886 86 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 POLHP1-201ENST00000411806 470 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.85□□□□□ -1.95
NPHP1O15259 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.85□□□□□ -1.95
NPHP1O15259 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.85□□□□□ -1.95
NPHP1O15259 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.85□□□□□ -1.95
NPHP1O15259 HSPE1P18-201ENST00000517602 280 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 AC118273.2-201ENST00000532092 465 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.85□□□□□ -1.95
NPHP1O15259 HMGB1P33-201ENST00000563485 527 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 MIR5007-201ENST00000583098 95 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.85□□□□□ -1.95
NPHP1O15259 ZNF72P-201ENST00000425869 1908 ntBASIC2.85□□□□□ -1.95
NPHP1O15259 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
NPHP1O15259 MIR514A2-201ENST00000385131 88 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms