Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 RNU6-622P-201ENST00000384272 103 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 RNU6-114P-201ENST00000384704 105 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 SNORD65C-201ENST00000390962 71 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC0.03□□□□□ -2.4
HMGN4O00479 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC0.03□□□□□ -2.4
HMGN4O00479 RNU6-575P-201ENST00000411326 105 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC0.03□□□□□ -2.4
HMGN4O00479 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC0.03□□□□□ -2.4
HMGN4O00479 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC0.03□□□□□ -2.4
HMGN4O00479 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC0.03□□□□□ -2.4
HMGN4O00479 RPEP5-201ENST00000441137 268 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 AL606662.1-201ENST00000445763 553 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 AC012308.1-201ENST00000451232 178 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC0.03□□□□□ -2.4
HMGN4O00479 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC0.03□□□□□ -2.4
HMGN4O00479 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.03□□□□□ -2.4
HMGN4O00479 AL391001.1-201ENST00000602747 715 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 AC063943.3-201ENST00000615562 356 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 MIR6515-201ENST00000619843 57 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 AC004808.1-201ENST00000627671 721 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 MIR1322-201ENST00000638013 71 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 AC132825.7-201ENST00000638744 335 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 ANKRD36BP1-202ENST00000604892 1417 ntBASIC0.03□□□□□ -2.41
HMGN4O00479 SNRPEP3-201ENST00000338402 276 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 MIR340-201ENST00000362125 95 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 RNU6-1123P-201ENST00000362347 106 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 RNU6-97P-201ENST00000363387 104 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 MIR216A-201ENST00000385063 110 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 COX6CP10-201ENST00000416832 224 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 AC123900.1-201ENST00000420390 96 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.02□□□□□ -2.41
HMGN4O00479 MTCO3P29-201ENST00000432119 779 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 AC092427.1-201ENST00000439177 601 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 AC069257.2-201ENST00000441819 155 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 AC091435.1-201ENST00000505442 584 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC0.02□□□□□ -2.41
HMGN4O00479 BNIP3P6-201ENST00000549284 499 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC0.02□□□□□ -2.41
HMGN4O00479 AC021506.2-201ENST00000612354 169 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.02□□□□□ -2.41
HMGN4O00479 AC092656.1-203ENST00000624134 423 ntBASIC0.02□□□□□ -2.41
HMGN4O00479 RNU6-950P-201ENST00000384651 107 ntBASIC0.01□□□□□ -2.41
HMGN4O00479 RAC1P6-201ENST00000423911 575 ntBASIC0.01□□□□□ -2.41
HMGN4O00479 MTND4P24-201ENST00000424002 397 ntBASIC0.01□□□□□ -2.41
HMGN4O00479 FABP5P4-201ENST00000437203 171 ntBASIC0.01□□□□□ -2.41
HMGN4O00479 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC0.01□□□□□ -2.41
HMGN4O00479 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC0.01□□□□□ -2.41
HMGN4O00479 RPS26P48-201ENST00000491713 339 ntBASIC0.01□□□□□ -2.41
HMGN4O00479 SNORA31.3-201ENST00000516029 96 ntBASIC0.01□□□□□ -2.41
HMGN4O00479 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC0.01□□□□□ -2.41
HMGN4O00479 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.01□□□□□ -2.41
HMGN4O00479 MIR4709-201ENST00000577272 72 ntBASIC0.01□□□□□ -2.41
HMGN4O00479 AC060771.1-201ENST00000582031 164 ntBASIC0.01□□□□□ -2.41
HMGN4O00479 AC098483.2-201ENST00000603158 454 ntBASIC0.01□□□□□ -2.41
HMGN4O00479 AL358072.1-201ENST00000604156 575 ntBASIC0.01□□□□□ -2.41
HMGN4O00479 MIR98-201ENST00000606724 119 ntBASIC0.01□□□□□ -2.41
HMGN4O00479 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC0.01□□□□□ -2.41
HMGN4O00479 MIR6718-201ENST00000616153 80 ntBASIC0.01□□□□□ -2.41
HMGN4O00479 SNORD3E-201ENST00000362899 217 ntBASIC0□□□□□ -2.41
HMGN4O00479 RNU6-1335P-201ENST00000365426 107 ntBASIC0□□□□□ -2.41
HMGN4O00479 MIR518E-201ENST00000385252 88 ntBASIC0□□□□□ -2.41
HMGN4O00479 SNORD89-201ENST00000390981 114 ntBASIC0□□□□□ -2.41
HMGN4O00479 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0□□□□□ -2.41
HMGN4O00479 ELOCP9-201ENST00000418624 239 ntBASIC0□□□□□ -2.41
HMGN4O00479 AC011233.1-201ENST00000422812 283 ntBASIC0□□□□□ -2.41
HMGN4O00479 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC0□□□□□ -2.41
HMGN4O00479 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0□□□□□ -2.41
HMGN4O00479 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC0□□□□□ -2.41
HMGN4O00479 LARP1BP3-201ENST00000437229 869 ntBASIC0□□□□□ -2.41
HMGN4O00479 AC104982.1-201ENST00000478775 574 ntBASIC0□□□□□ -2.41
HMGN4O00479 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC0□□□□□ -2.41
HMGN4O00479 SNORA31.19-201ENST00000517079 126 ntBASIC0□□□□□ -2.41
HMGN4O00479 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0□□□□□ -2.41
HMGN4O00479 AP002906.1-201ENST00000603405 233 ntBASIC0□□□□□ -2.41
HMGN4O00479 AL031281.1-201ENST00000604049 488 ntBASIC0□□□□□ -2.41
HMGN4O00479 RAC1P9-201ENST00000604990 392 ntBASIC0□□□□□ -2.41
HMGN4O00479 AC092354.1-201ENST00000606057 376 ntBASIC0□□□□□ -2.41
HMGN4O00479 AL360219.1-201ENST00000610230 366 ntBASIC0□□□□□ -2.41
HMGN4O00479 AL356094.1-201ENST00000624663 1212 ntBASIC0□□□□□ -2.41
HMGN4O00479 SNORD3E-202ENST00000627253 216 ntBASIC0□□□□□ -2.41
HMGN4O00479 RNU6-212P-201ENST00000362642 104 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 RNU6-862P-201ENST00000362804 105 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 SNORD51.1-201ENST00000365405 77 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 SNORA40C-201ENST00000391285 128 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 SNORD99-201ENST00000408612 74 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 RPL22P18-201ENST00000417197 377 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 RPS3AP37-201ENST00000419176 745 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 USP9YP14-201ENST00000430663 563 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC-0.01□□□□□ -2.41
HMGN4O00479 RNFT1P2-201ENST00000443064 757 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 MTND2P6-201ENST00000455337 1030 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 WDR78-207ENST00000488333 613 ntTSL 3 BASIC-0.01□□□□□ -2.41
HMGN4O00479 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC-0.01□□□□□ -2.41
HMGN4O00479 AC005741.1-201ENST00000511094 432 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 AC024589.1-201ENST00000512207 263 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC-0.01□□□□□ -2.41
HMGN4O00479 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC-0.01□□□□□ -2.41
HMGN4O00479 EIF1AXP2-201ENST00000555940 413 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 MIR4666A-201ENST00000580160 79 ntBASIC-0.01□□□□□ -2.41
HMGN4O00479 AL357080.1-201ENST00000617394 239 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms