Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC-0.23□□□□□ -2.45
CCDC88BA6NC98 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 SNORD114-9-201ENST00000364370 72 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 SNORA32.1-201ENST00000364514 115 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 RNU6-1280P-201ENST00000365211 107 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 RNU6-658P-201ENST00000384606 106 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 RNA5SP219-201ENST00000390940 113 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 AF228730.1-201ENST00000397972 663 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 CALM2P3-201ENST00000400429 449 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 ZNF92P1Y-201ENST00000415010 1191 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 PPP1R11P2-201ENST00000423543 382 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 AC008267.5-201ENST00000424928 265 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 HMGN2P34-201ENST00000437647 269 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 RPS27AP8-201ENST00000452665 445 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 RN7SKP258-201ENST00000517151 304 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 AC022861.1-201ENST00000522981 663 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 AC093249.1-201ENST00000567049 203 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC-0.24□□□□□ -2.45
CCDC88BA6NC98 Y_RNA.363-201ENST00000365529 113 ntBASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 RNU6-1054P-201ENST00000411293 104 ntBASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 PSMA6P3-201ENST00000428242 164 ntBASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 TXNL1P1-201ENST00000429528 554 ntBASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 FABP5P4-201ENST00000437203 171 ntBASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 MTND1P33-201ENST00000446251 917 ntBASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 SNORD116-30-201ENST00000516468 85 ntBASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 RNA5SP437-201ENST00000517249 129 ntBASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 AP001429.1-201ENST00000602568 530 ntBASIC-0.25□□□□□ -2.45
CCDC88BA6NC98 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 RNU6-302P-201ENST00000365249 107 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 SNORA51.6-201ENST00000384151 125 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 SNORA80D-201ENST00000384488 135 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 AL355796.1-201ENST00000406706 323 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 RN7SKP142-201ENST00000411236 328 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 RPL22P18-201ENST00000417197 377 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 RAB28P5-201ENST00000427490 651 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 snoU13.11-201ENST00000459219 104 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 AC093534.1-201ENST00000504977 132 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 AC097473.1-201ENST00000508142 408 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 AL132657.2-201ENST00000564417 358 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 AC025627.3-201ENST00000582078 182 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 RNU4-5P-201ENST00000607255 135 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 AL451064.1-201ENST00000607718 471 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 AC138627.2-201ENST00000624202 601 ntBASIC-0.26□□□□□ -2.45
CCDC88BA6NC98 SNORD114-19-201ENST00000363072 75 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 SNORD114-28-201ENST00000363610 72 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 RNU6-1274P-201ENST00000384557 107 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 RNU6-950P-201ENST00000384651 107 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 CCNG1P1-201ENST00000406783 885 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 AL359704.1-201ENST00000411586 781 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 MTCYBP1-201ENST00000454315 1119 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 AC104982.1-201ENST00000478775 574 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 RNU5B-3P-201ENST00000516601 115 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 AC026371.1-201ENST00000551867 419 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 AC011195.1-201ENST00000578177 177 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 AL353997.4-201ENST00000586196 166 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 AL031281.1-201ENST00000604049 488 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 MIR4315-1-201ENST00000636800 73 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 MIR4315-2-201ENST00000640925 73 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 AC010615.1-201ENST00000594254 1764 ntBASIC-0.27□□□□□ -2.45
CCDC88BA6NC98 RNU6-386P-201ENST00000362650 107 ntBASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 RNA5SP496-201ENST00000391240 109 ntBASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 RNA5SP266-201ENST00000410273 108 ntBASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 RAC1P8-201ENST00000427086 527 ntBASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 AC245047.7-201ENST00000440265 293 ntBASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 MTCO3P2-201ENST00000457365 171 ntBASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 AC098483.2-201ENST00000603158 454 ntBASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 AL357094.1-201ENST00000603845 844 ntBASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 RNU6-87P-201ENST00000607561 108 ntBASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.28□□□□□ -2.45
CCDC88BA6NC98 RNU6-944P-201ENST00000364023 107 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 DHFRP6-201ENST00000401776 268 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 UBE2V1P10-201ENST00000414685 269 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 CCDC58P2-201ENST00000417131 366 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 AC138623.1-201ENST00000418060 216 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 MTCYBP11-201ENST00000447254 1109 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 RPS26P48-201ENST00000491713 339 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 RNU2-53P-201ENST00000516257 147 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 RNA5SP481-201ENST00000516814 122 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 ACA59.2-201ENST00000517061 156 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC-0.29□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms