Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 AL391987.6-201ENST00000305671 199 ntBASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 RNU1-78P-201ENST00000391248 165 ntBASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 RNA5SP247-201ENST00000411181 105 ntBASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 AC004965.1-201ENST00000413033 213 ntBASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 RPL22P18-201ENST00000417197 377 ntBASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 RPL37P21-201ENST00000435890 276 ntBASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 CR769776.1-201ENST00000441254 787 ntBASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 KATNBL1P3-201ENST00000443475 909 ntBASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 AC130509.1-201ENST00000464158 433 ntBASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 AL161670.1-201ENST00000554348 137 ntBASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 AC092106.3-201ENST00000611308 722 ntBASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 AC120349.3-201ENST00000624377 529 ntBASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.2□□□□□ -2.22
USH1CQ9Y6N9 RAP1BP3-201ENST00000407180 549 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 AL357139.1-201ENST00000407792 426 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 AL031779.1-201ENST00000415663 330 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 MTND5P2-201ENST00000442927 1142 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 MTATP6P14-201ENST00000455189 673 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 SNRPFP4-201ENST00000456366 242 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 AC005840.1-201ENST00000498412 377 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 MTCO3P9-201ENST00000506989 781 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 MIR449C-201ENST00000516047 92 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 RNA5SP490-201ENST00000517141 136 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 MTND4LP18-201ENST00000526864 291 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 AP003034.1-201ENST00000534621 422 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 ZNF519P3-201ENST00000557158 1032 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 AC005786.1-201ENST00000588553 154 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 AC105148.1-201ENST00000604961 409 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 AL139286.2-201ENST00000606838 396 ntBASIC1.19□□□□□ -2.22
USH1CQ9Y6N9 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 Y_RNA.18-201ENST00000362461 102 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 RNU6-414P-201ENST00000363705 104 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 SNORA7.1-201ENST00000363750 139 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 SNORA62.1-201ENST00000364287 154 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 SNORA40.6-201ENST00000391153 128 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 RNA5SP111-201ENST00000411386 101 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 AL591704.2-201ENST00000421658 181 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 TOMM22P2-201ENST00000430735 237 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 MTND1P32-201ENST00000433043 938 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 MTCO1P44-201ENST00000441935 243 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 AL360271.2-201ENST00000447710 161 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 RNU6-333P-201ENST00000459117 107 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 TRAV32-201ENST00000553993 340 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 MIR3660-201ENST00000584845 100 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 RMST_7.1-201ENST00000621935 268 ntBASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
USH1CQ9Y6N9 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 RNU6-78P-201ENST00000362897 107 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 RNU6-271P-201ENST00000363858 105 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 Y_RNA.327-201ENST00000365201 102 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 MIR544A-201ENST00000384855 91 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 MIR122-201ENST00000385044 85 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 MIR1267-201ENST00000408723 78 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 C1DP2-201ENST00000418167 426 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 RPS27AP14-201ENST00000422868 454 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 AL591043.1-201ENST00000432461 424 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 AC084290.1-201ENST00000434995 374 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 AC007969.2-201ENST00000441891 191 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 MTND2P4-201ENST00000445034 1004 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 AC087477.1-201ENST00000465747 340 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 AC099513.1-201ENST00000490423 301 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 HMGN1P13-201ENST00000505795 138 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 RNU5F-2P-201ENST00000516066 82 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 RNU1-86P-201ENST00000516108 154 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 RNU1-107P-201ENST00000516617 154 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 AP002453.2-201ENST00000533503 320 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 MIR4421-201ENST00000578133 69 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 LINC02555-201ENST00000563933 1951 ntBASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.17□□□□□ -2.22
USH1CQ9Y6N9 RNU6-527P-201ENST00000363425 104 ntBASIC1.16□□□□□ -2.22
USH1CQ9Y6N9 RNU6-112P-201ENST00000363599 104 ntBASIC1.16□□□□□ -2.22
USH1CQ9Y6N9 RNU6-660P-201ENST00000364566 109 ntBASIC1.16□□□□□ -2.22
USH1CQ9Y6N9 RNU5E-7P-201ENST00000365290 117 ntBASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 133.8 ms