Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC4.39□□□□□ -1.71
USP3Q9Y6I4 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP3Q9Y6I4 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.38□□□□□ -1.71
USP3Q9Y6I4 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP3Q9Y6I4 RNU6-899P-201ENST00000363947 107 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 MIR539-201ENST00000365690 78 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 MIR186-201ENST00000384988 86 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 MIR513C-201ENST00000401352 84 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 U3.40-201ENST00000408706 208 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 RNA5SP317-201ENST00000410176 116 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 RNA5SP311-201ENST00000411290 116 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC4.38□□□□□ -1.71
USP3Q9Y6I4 AL356095.1-201ENST00000417217 199 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 BPY2DP-201ENST00000422208 265 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 RNU6-581P-201ENST00000516214 105 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 RNA5SP315-201ENST00000516340 116 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 SNORA31.16-201ENST00000516773 139 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 RNA5SP312-201ENST00000517068 116 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 AC136628.3-201ENST00000521868 290 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USP3Q9Y6I4 CYP4A43P-201ENST00000568156 121 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.38□□□□□ -1.71
USP3Q9Y6I4 DNAJC19P2-201ENST00000593340 302 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 SNORD98-201ENST00000636377 67 ntBASIC4.38□□□□□ -1.71
USP3Q9Y6I4 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP3Q9Y6I4 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP3Q9Y6I4 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
USP3Q9Y6I4 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
USP3Q9Y6I4 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
USP3Q9Y6I4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP3Q9Y6I4 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 RNU6-600P-201ENST00000362524 99 ntBASIC4.37□□□□□ -1.71
USP3Q9Y6I4 SNORA31-201ENST00000362607 130 ntBASIC4.37□□□□□ -1.71
USP3Q9Y6I4 Y_RNA.353-201ENST00000365440 108 ntBASIC4.37□□□□□ -1.71
USP3Q9Y6I4 RNU6-763P-201ENST00000390865 106 ntBASIC4.37□□□□□ -1.71
USP3Q9Y6I4 RPL23AP46-201ENST00000438548 490 ntBASIC4.37□□□□□ -1.71
USP3Q9Y6I4 AIG1P1-201ENST00000503376 148 ntBASIC4.37□□□□□ -1.71
USP3Q9Y6I4 AC006499.6-201ENST00000511169 607 ntBASIC4.37□□□□□ -1.71
USP3Q9Y6I4 RNU6-436P-201ENST00000516171 114 ntBASIC4.37□□□□□ -1.71
USP3Q9Y6I4 AC006199.1-201ENST00000548728 219 ntBASIC4.37□□□□□ -1.71
USP3Q9Y6I4 AC007224.1-201ENST00000564410 144 ntBASIC4.37□□□□□ -1.71
USP3Q9Y6I4 AC022655.2-201ENST00000577280 318 ntBASIC4.37□□□□□ -1.71
USP3Q9Y6I4 RNA5SP196-201ENST00000625967 102 ntBASIC4.37□□□□□ -1.71
USP3Q9Y6I4 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP3Q9Y6I4 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.36□□□□□ -1.71
USP3Q9Y6I4 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC4.36□□□□□ -1.71
USP3Q9Y6I4 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP3Q9Y6I4 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP3Q9Y6I4 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.36□□□□□ -1.71
USP3Q9Y6I4 Y_RNA.127-201ENST00000363386 109 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 RNU6-324P-201ENST00000363957 106 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 RN7SKP280-201ENST00000364196 304 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 Y_RNA.287-201ENST00000364853 94 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 RNU6-215P-201ENST00000365169 102 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 RNU1-13P-201ENST00000384499 162 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 RNU6-578P-201ENST00000390980 103 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 RNA5SP129-201ENST00000410276 118 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.36□□□□□ -1.71
USP3Q9Y6I4 RN7SL604P-201ENST00000492589 296 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 IFITM8P-201ENST00000522529 394 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 AC069240.1-201ENST00000548774 375 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.36□□□□□ -1.71
USP3Q9Y6I4 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.36□□□□□ -1.71
USP3Q9Y6I4 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC4.36□□□□□ -1.71
USP3Q9Y6I4 AC105137.2-201ENST00000569073 466 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 MIR5688-201ENST00000580619 83 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 AL359881.1-201ENST00000602916 267 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 AC025946.2-201ENST00000603398 234 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 MIR6867-201ENST00000610636 67 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 AC013791.1-201ENST00000616619 62 ntBASIC4.36□□□□□ -1.71
USP3Q9Y6I4 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
USP3Q9Y6I4 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP3Q9Y6I4 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
USP3Q9Y6I4 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 AC100821.1-201ENST00000523153 2479 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms