Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU1-139P-201ENST00000391307 165 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 RNU2-3P-201ENST00000410144 191 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AL135790.2-201ENST00000437701 267 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC069257.2-201ENST00000441819 155 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.71□□□□□ -2.3
SCN3AQ9NY46 DUXAP8-207ENST00000456786 622 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC087477.1-201ENST00000465747 340 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.71□□□□□ -2.3
SCN3AQ9NY46 BNIP3P26-201ENST00000600827 554 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AC073410.2-201ENST00000603240 332 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 BNIP3P31-201ENST00000604515 566 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 AL355816.2-201ENST00000610049 647 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.71□□□□□ -2.3
SCN3AQ9NY46 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.71□□□□□ -2.3
SCN3AQ9NY46 SNORA63.3-201ENST00000362682 132 ntBASIC0.7□□□□□ -2.3
SCN3AQ9NY46 RNU6-862P-201ENST00000362804 105 ntBASIC0.7□□□□□ -2.3
SCN3AQ9NY46 RNU6-72P-201ENST00000384285 79 ntBASIC0.7□□□□□ -2.3
SCN3AQ9NY46 SNORA40.2-201ENST00000390847 128 ntBASIC0.7□□□□□ -2.3
SCN3AQ9NY46 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN3AQ9NY46 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC0.7□□□□□ -2.3
SCN3AQ9NY46 RPL39P28-201ENST00000465655 155 ntBASIC0.7□□□□□ -2.3
SCN3AQ9NY46 AC117454.1-201ENST00000491120 168 ntBASIC0.7□□□□□ -2.3
SCN3AQ9NY46 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN3AQ9NY46 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC0.7□□□□□ -2.3
SCN3AQ9NY46 AC107934.1-201ENST00000522215 217 ntBASIC0.7□□□□□ -2.3
SCN3AQ9NY46 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN3AQ9NY46 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.7□□□□□ -2.3
SCN3AQ9NY46 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN3AQ9NY46 NIFKP6-201ENST00000598115 845 ntBASIC0.7□□□□□ -2.3
SCN3AQ9NY46 HSPE1P19-201ENST00000603327 295 ntBASIC0.7□□□□□ -2.3
SCN3AQ9NY46 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN3AQ9NY46 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.7□□□□□ -2.3
SCN3AQ9NY46 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC0.7□□□□□ -2.3
SCN3AQ9NY46 AC095038.3-201ENST00000634439 195 ntBASIC0.7□□□□□ -2.3
SCN3AQ9NY46 AC006927.4-201ENST00000639187 543 ntBASIC0.7□□□□□ -2.3
SCN3AQ9NY46 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC0.7□□□□□ -2.3
SCN3AQ9NY46 RNU6-1019P-201ENST00000364424 107 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 RNU6-723P-201ENST00000383973 107 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 MIR194-1-201ENST00000384892 85 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 RNU6-1245P-201ENST00000411130 106 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 BTF3L4P1-201ENST00000413813 468 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.69□□□□□ -2.3
SCN3AQ9NY46 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC0.69□□□□□ -2.3
SCN3AQ9NY46 MTCYBP5-201ENST00000423752 1135 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
SCN3AQ9NY46 FTH1P12-201ENST00000432137 551 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 UBE2V1P8-201ENST00000437166 265 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 GTF2IP13-201ENST00000438487 386 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 MTCO1P44-201ENST00000441935 243 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC003071.1-201ENST00000451219 789 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC021146.2-201ENST00000504736 556 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 MTCO3P28-201ENST00000513351 515 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC0.69□□□□□ -2.3
SCN3AQ9NY46 RRN3P3-201ENST00000549207 578 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC011712.1-201ENST00000588959 234 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 VN1R82P-201ENST00000601481 356 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC013244.2-201ENST00000603396 103 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC112220.2-201ENST00000605513 533 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC093648.1-201ENST00000623546 606 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC008993.2-201ENST00000631744 806 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC100821.1-201ENST00000523153 2479 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC099786.3-201ENST00000565735 1410 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 RNU6-655P-201ENST00000362858 107 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 SNORA72.2-201ENST00000365028 127 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 RNU6-17P-201ENST00000384245 107 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 RNU6-18P-201ENST00000384527 107 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 MIR597-201ENST00000384968 97 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 RNU6-817P-201ENST00000391083 104 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 RPL37P10-201ENST00000412884 288 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 RPL21P111-201ENST00000418453 477 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AL353777.1-201ENST00000425552 326 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC0.69□□□□□ -2.3
SCN3AQ9NY46 MTND2P4-201ENST00000445034 1004 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 RPS26P55-201ENST00000471178 356 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 RPL39P36-201ENST00000490784 156 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.69□□□□□ -2.3
SCN3AQ9NY46 SUMO2P5-201ENST00000506790 245 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC113347.3-201ENST00000509113 148 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC010587.2-201ENST00000511727 448 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.69□□□□□ -2.3
SCN3AQ9NY46 AC009033.1-201ENST00000624279 431 ntBASIC0.69□□□□□ -2.3
SCN3AQ9NY46 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
SCN3AQ9NY46 SNORD114-23-201ENST00000363536 72 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 RNU5E-7P-201ENST00000365290 117 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 MIR186-201ENST00000384988 86 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 MIR936-201ENST00000401264 98 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.68□□□□□ -2.3
SCN3AQ9NY46 RPL23AP30-201ENST00000432419 501 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 AL445305.1-201ENST00000432577 575 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 MTND5P15-201ENST00000434246 349 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 LARP1BP3-201ENST00000437229 869 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
SCN3AQ9NY46 AC025465.3-201ENST00000510570 311 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 MTND1P36-201ENST00000522384 936 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.68□□□□□ -2.3
SCN3AQ9NY46 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms