Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.29□□□□□ -2.2
USP42Q9H9J4 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.29□□□□□ -2.2
USP42Q9H9J4 ZNF680P1-201ENST00000436625 1469 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 RNU6-942P-201ENST00000363002 107 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 RNU1-133P-201ENST00000364867 167 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 RNU6-946P-201ENST00000383878 107 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 MIR532-201ENST00000385025 91 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 MIR513A1-201ENST00000385138 129 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 SNORA48.1-201ENST00000390879 135 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 RNU2-23P-201ENST00000410545 195 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
USP42Q9H9J4 USP9YP18-201ENST00000425912 695 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC1.28□□□□□ -2.2
USP42Q9H9J4 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC1.28□□□□□ -2.2
USP42Q9H9J4 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.28□□□□□ -2.2
USP42Q9H9J4 GDI2P2-201ENST00000445131 608 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 RPS29P28-201ENST00000446439 141 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 EXOSC3P1-201ENST00000448649 500 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 AC007395.1-201ENST00000451333 677 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
USP42Q9H9J4 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC1.28□□□□□ -2.2
USP42Q9H9J4 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC1.28□□□□□ -2.2
USP42Q9H9J4 AC119751.4-201ENST00000507498 357 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 MTCYBP40-201ENST00000509390 1135 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 RNU6-1092P-201ENST00000516955 87 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 RN7SKP256-201ENST00000517201 314 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 HSPE1P4-201ENST00000550617 308 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 AL391646.1-201ENST00000603860 190 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 AC010900.2-201ENST00000604508 210 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 U6.42-201ENST00000618440 107 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 AC007792.1-201ENST00000623023 402 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 MIR1248-201ENST00000629190 106 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
USP42Q9H9J4 AC008993.2-201ENST00000631744 806 ntBASIC1.28□□□□□ -2.2
USP42Q9H9J4 Y_RNA.99-201ENST00000363138 105 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 SNORA75B-201ENST00000384053 137 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 RNU6-622P-201ENST00000384272 103 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 RNU6-72P-201ENST00000384285 79 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 RPS3AP36-201ENST00000398190 775 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 AL355143.1-201ENST00000407101 841 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 CYCSP33-201ENST00000414485 327 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 AL590556.1-201ENST00000423231 483 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 MTCO3P5-201ENST00000433620 714 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 MTND3P1-201ENST00000441336 220 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 PTENP1-201ENST00000447117 1215 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 MTATP6P14-201ENST00000455189 673 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 USP9YP25-201ENST00000457708 443 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC1.27□□□□□ -2.21
USP42Q9H9J4 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC1.27□□□□□ -2.21
USP42Q9H9J4 HSPE1P23-201ENST00000509838 286 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 SNORA31.17-201ENST00000516953 127 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 AL356057.1-201ENST00000533798 831 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC1.27□□□□□ -2.21
USP42Q9H9J4 CYP3A137P-201ENST00000562436 69 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.27□□□□□ -2.21
USP42Q9H9J4 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.27□□□□□ -2.21
USP42Q9H9J4 AC108747.1-201ENST00000609508 535 ntBASIC1.27□□□□□ -2.21
USP42Q9H9J4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
USP42Q9H9J4 SNORD3E-201ENST00000362899 217 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 SNORD56.1-201ENST00000362913 68 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 Y_RNA.205-201ENST00000364128 113 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 RNU4-68P-201ENST00000364314 141 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 RNU6-487P-201ENST00000365430 104 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 RNU6-757P-201ENST00000410334 100 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.26□□□□□ -2.21
USP42Q9H9J4 RPL30P13-201ENST00000418873 348 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 AL627311.1-201ENST00000431514 115 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 RPL23AP30-201ENST00000432419 501 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC1.26□□□□□ -2.21
USP42Q9H9J4 RPS27P1-201ENST00000450552 247 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 AP001025.1-201ENST00000486139 332 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 AC098862.1-201ENST00000504991 413 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.26□□□□□ -2.21
USP42Q9H9J4 AC068587.4-201ENST00000533893 186 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.26□□□□□ -2.21
USP42Q9H9J4 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.26□□□□□ -2.21
USP42Q9H9J4 AC137800.2-201ENST00000574375 120 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.26□□□□□ -2.21
USP42Q9H9J4 MIR4422-201ENST00000581938 83 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC1.26□□□□□ -2.21
USP42Q9H9J4 AL592221.1-201ENST00000605266 382 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 AL158042.1-201ENST00000605338 460 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 AC018645.2-201ENST00000609151 472 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 AL049777.1-201ENST00000622740 518 ntBASIC1.26□□□□□ -2.21
USP42Q9H9J4 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.26□□□□□ -2.21
USP42Q9H9J4 MIR412-201ENST00000362142 91 ntBASIC1.25□□□□□ -2.21
USP42Q9H9J4 RNU4-92P-201ENST00000363783 136 ntBASIC1.25□□□□□ -2.21
USP42Q9H9J4 RNA5SP493-201ENST00000364115 91 ntBASIC1.25□□□□□ -2.21
USP42Q9H9J4 RNU5E-6P-201ENST00000365574 115 ntBASIC1.25□□□□□ -2.21
USP42Q9H9J4 RNU6-160P-201ENST00000384591 107 ntBASIC1.25□□□□□ -2.21
USP42Q9H9J4 MIR122-201ENST00000385044 85 ntBASIC1.25□□□□□ -2.21
USP42Q9H9J4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
USP42Q9H9J4 RNU2-41P-201ENST00000410991 178 ntBASIC1.25□□□□□ -2.21
USP42Q9H9J4 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.25□□□□□ -2.21
USP42Q9H9J4 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.25□□□□□ -2.21
USP42Q9H9J4 AL035666.1-201ENST00000446195 348 ntBASIC1.25□□□□□ -2.21
USP42Q9H9J4 AC112492.4-201ENST00000456549 352 ntBASIC1.25□□□□□ -2.21
USP42Q9H9J4 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.25□□□□□ -2.21
USP42Q9H9J4 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms