Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RNU6-1286P-201ENST00000383871 107 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.86□□□□□ -1.79
SF3A1Q15459 RN7SKP220-201ENST00000410611 288 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.86□□□□□ -1.79
SF3A1Q15459 AL513124.1-201ENST00000450410 614 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 RNU7-152P-201ENST00000458982 64 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 AC073901.1-201ENST00000462471 408 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 AC090525.1-201ENST00000479116 478 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 AC027575.1-201ENST00000481064 460 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.86□□□□□ -1.79
SF3A1Q15459 AIG1P1-201ENST00000503376 148 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.86□□□□□ -1.79
SF3A1Q15459 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SF3A1Q15459 AC021231.3-201ENST00000558497 370 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 AC060766.3-201ENST00000591442 263 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 7SK.7-201ENST00000603504 247 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
SF3A1Q15459 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
SF3A1Q15459 AC080128.1-201ENST00000474389 1917 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 AL356274.2-201ENST00000624379 3752 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
SF3A1Q15459 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SF3A1Q15459 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SF3A1Q15459 SNORA9-201ENST00000384215 133 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 SNORA36A-201ENST00000384221 132 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 MIR491-201ENST00000384877 84 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 RN7SKP111-201ENST00000410349 271 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.85□□□□□ -1.79
SF3A1Q15459 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 RPS29P4-201ENST00000414733 161 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 EIF4EP4-201ENST00000424916 578 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 RPL30P4-201ENST00000429309 333 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.85□□□□□ -1.79
SF3A1Q15459 snoU13.14-201ENST00000459372 104 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 AL121594.1-201ENST00000475906 575 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 AC022447.4-201ENST00000504053 364 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 AC022493.2-201ENST00000506122 481 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 SNORA31.16-201ENST00000516773 139 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 SCARNA3-201ENST00000517097 143 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 SNORA70.24-201ENST00000517233 118 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.85□□□□□ -1.79
SF3A1Q15459 MIR3922-201ENST00000585192 84 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 AC090971.5-201ENST00000621102 293 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SF3A1Q15459 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SF3A1Q15459 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
SF3A1Q15459 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.85□□□□□ -1.79
SF3A1Q15459 FAM35CP-201ENST00000554755 2470 ntBASIC3.85□□□□□ -1.79
SF3A1Q15459 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.85□□□□□ -1.79
SF3A1Q15459 RNA5SP72-201ENST00000364442 117 ntBASIC3.84□□□□□ -1.79
SF3A1Q15459 AC008267.5-201ENST00000424928 265 ntBASIC3.84□□□□□ -1.79
SF3A1Q15459 RPS12P18-201ENST00000442381 270 ntBASIC3.84□□□□□ -1.79
SF3A1Q15459 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.84□□□□□ -1.79
SF3A1Q15459 RPL23AP70-201ENST00000483361 460 ntBASIC3.84□□□□□ -1.79
SF3A1Q15459 RPL30P1-201ENST00000488676 339 ntBASIC3.84□□□□□ -1.79
SF3A1Q15459 FCF1P8-201ENST00000510322 597 ntBASIC3.84□□□□□ -1.79
SF3A1Q15459 RNU5F-2P-201ENST00000516066 82 ntBASIC3.84□□□□□ -1.79
SF3A1Q15459 SNORA64.4-201ENST00000516632 81 ntBASIC3.84□□□□□ -1.79
SF3A1Q15459 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.84□□□□□ -1.79
SF3A1Q15459 AC027176.1-201ENST00000560204 514 ntBASIC3.84□□□□□ -1.79
SF3A1Q15459 AL034555.1-201ENST00000604816 211 ntBASIC3.84□□□□□ -1.79
SF3A1Q15459 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.84□□□□□ -1.79
SF3A1Q15459 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SF3A1Q15459 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.84□□□□□ -1.79
SF3A1Q15459 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
SF3A1Q15459 AC138915.1-201ENST00000565427 1685 ntBASIC3.84□□□□□ -1.8
SF3A1Q15459 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.84□□□□□ -1.8
SF3A1Q15459 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.84□□□□□ -1.8
SF3A1Q15459 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
SF3A1Q15459 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.83□□□□□ -1.8
SF3A1Q15459 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.83□□□□□ -1.8
SF3A1Q15459 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
SF3A1Q15459 RNY1P16-201ENST00000363063 111 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 Y_RNA.813-201ENST00000364639 102 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 RNU6-1040P-201ENST00000383974 107 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 SNORA29-201ENST00000384183 140 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 RNA5SP494-201ENST00000410653 129 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 AC243428.1-201ENST00000421099 264 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.83□□□□□ -1.8
SF3A1Q15459 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.83□□□□□ -1.8
SF3A1Q15459 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.83□□□□□ -1.8
SF3A1Q15459 RPS15AP7-201ENST00000439294 405 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 AC011816.1-201ENST00000441346 546 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.83□□□□□ -1.8
SF3A1Q15459 AC091179.1-201ENST00000461606 579 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 AC092185.1-201ENST00000491371 97 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.83□□□□□ -1.8
SF3A1Q15459 AC023141.11-201ENST00000508864 202 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 RNU6-120P-201ENST00000516077 103 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 AC016256.1-201ENST00000547971 354 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 AC093249.1-201ENST00000567049 203 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 AC105245.1-201ENST00000581934 244 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 MIR3136-201ENST00000583498 78 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 RPL30P11-203ENST00000598995 310 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 U3.45-201ENST00000607547 219 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 AC005014.2-201ENST00000607795 599 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 AC090517.3-201ENST00000625170 141 ntBASIC3.83□□□□□ -1.8
SF3A1Q15459 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms