Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 Y_RNA.245-201ENST00000364493 95 ntBASIC0.03□□□□□ -2.4
CUX1P39880 Y_RNA.457-201ENST00000384237 111 ntBASIC0.03□□□□□ -2.4
CUX1P39880 RNU6-658P-201ENST00000384606 106 ntBASIC0.03□□□□□ -2.4
CUX1P39880 RN7SKP142-201ENST00000411236 328 ntBASIC0.03□□□□□ -2.4
CUX1P39880 AC022493.2-201ENST00000506122 481 ntBASIC0.03□□□□□ -2.4
CUX1P39880 MTCYBP43-201ENST00000513621 740 ntBASIC0.03□□□□□ -2.4
CUX1P39880 RNU6-528P-201ENST00000516926 100 ntBASIC0.03□□□□□ -2.4
CUX1P39880 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0.03□□□□□ -2.4
CUX1P39880 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC0.03□□□□□ -2.4
CUX1P39880 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC0.03□□□□□ -2.4
CUX1P39880 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.03□□□□□ -2.4
CUX1P39880 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC0.03□□□□□ -2.4
CUX1P39880 AC012065.4-201ENST00000602445 679 ntBASIC0.03□□□□□ -2.4
CUX1P39880 AC123767.1-202ENST00000620407 817 ntBASIC0.03□□□□□ -2.4
CUX1P39880 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC0.03□□□□□ -2.4
CUX1P39880 SNORD114-16-201ENST00000363044 70 ntBASIC0.03□□□□□ -2.41
CUX1P39880 SNORD114-19-201ENST00000363072 75 ntBASIC0.03□□□□□ -2.41
CUX1P39880 RNU6-1280P-201ENST00000365211 107 ntBASIC0.03□□□□□ -2.41
CUX1P39880 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.03□□□□□ -2.41
CUX1P39880 AC093422.3-201ENST00000428506 305 ntBASIC0.03□□□□□ -2.41
CUX1P39880 AC099677.2-201ENST00000436385 175 ntBASIC0.03□□□□□ -2.41
CUX1P39880 MTND2P4-201ENST00000445034 1004 ntBASIC0.03□□□□□ -2.41
CUX1P39880 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.03□□□□□ -2.41
CUX1P39880 AC108740.1-201ENST00000498629 225 ntBASIC0.03□□□□□ -2.41
CUX1P39880 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.03□□□□□ -2.41
CUX1P39880 RNU5A-4P-201ENST00000516588 111 ntBASIC0.03□□□□□ -2.41
CUX1P39880 RNU6-840P-201ENST00000517275 65 ntBASIC0.03□□□□□ -2.41
CUX1P39880 AP003049.1-201ENST00000529418 457 ntBASIC0.03□□□□□ -2.41
CUX1P39880 AC141557.1-201ENST00000540982 400 ntBASIC0.03□□□□□ -2.41
CUX1P39880 AL162730.1-201ENST00000605734 292 ntBASIC0.03□□□□□ -2.41
CUX1P39880 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC0.03□□□□□ -2.41
CUX1P39880 RNU6-1327P-201ENST00000365302 105 ntBASIC0.02□□□□□ -2.41
CUX1P39880 SNORD12-201ENST00000391002 90 ntBASIC0.02□□□□□ -2.41
CUX1P39880 AC008267.5-201ENST00000424928 265 ntBASIC0.02□□□□□ -2.41
CUX1P39880 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC0.02□□□□□ -2.41
CUX1P39880 AC130509.1-201ENST00000464158 433 ntBASIC0.02□□□□□ -2.41
CUX1P39880 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC0.02□□□□□ -2.41
CUX1P39880 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.02□□□□□ -2.41
CUX1P39880 AC010587.2-201ENST00000511727 448 ntBASIC0.02□□□□□ -2.41
CUX1P39880 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.02□□□□□ -2.41
CUX1P39880 SNORA31.4-201ENST00000516049 129 ntBASIC0.02□□□□□ -2.41
CUX1P39880 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.02□□□□□ -2.41
CUX1P39880 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC0.02□□□□□ -2.41
CUX1P39880 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.02□□□□□ -2.41
CUX1P39880 AC092106.3-201ENST00000611308 722 ntBASIC0.02□□□□□ -2.41
CUX1P39880 RMST_4.1-201ENST00000616886 107 ntBASIC0.02□□□□□ -2.41
CUX1P39880 AC009269.6-201ENST00000621778 588 ntBASIC0.02□□□□□ -2.41
CUX1P39880 AC080188.3-201ENST00000624842 748 ntBASIC0.02□□□□□ -2.41
CUX1P39880 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.02□□□□□ -2.41
CUX1P39880 SNORA9.1-201ENST00000362412 131 ntBASIC0.01□□□□□ -2.41
CUX1P39880 AL590556.1-201ENST00000423231 483 ntBASIC0.01□□□□□ -2.41
CUX1P39880 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.01□□□□□ -2.41
CUX1P39880 RPS26P45-201ENST00000471748 340 ntBASIC0.01□□□□□ -2.41
CUX1P39880 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.01□□□□□ -2.41
CUX1P39880 AC093249.1-201ENST00000567049 203 ntBASIC0.01□□□□□ -2.41
CUX1P39880 AC069114.2-201ENST00000604699 304 ntBASIC0.01□□□□□ -2.41
CUX1P39880 AC105148.1-201ENST00000604961 409 ntBASIC0.01□□□□□ -2.41
CUX1P39880 RAC1P9-201ENST00000604990 392 ntBASIC0.01□□□□□ -2.41
CUX1P39880 AC018926.1-201ENST00000616335 435 ntBASIC0.01□□□□□ -2.41
CUX1P39880 AL603758.1-201ENST00000618654 241 ntBASIC0.01□□□□□ -2.41
CUX1P39880 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.01□□□□□ -2.41
CUX1P39880 SNORD3E-201ENST00000362899 217 ntBASIC0□□□□□ -2.41
CUX1P39880 RNU1-119P-201ENST00000391122 165 ntBASIC0□□□□□ -2.41
CUX1P39880 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0□□□□□ -2.41
CUX1P39880 MTCO2P25-201ENST00000447065 681 ntBASIC0□□□□□ -2.41
CUX1P39880 AC016717.1-201ENST00000448918 286 ntBASIC0□□□□□ -2.41
CUX1P39880 RNU6-333P-201ENST00000459117 107 ntBASIC0□□□□□ -2.41
CUX1P39880 Y_RNA.700-201ENST00000516806 100 ntBASIC0□□□□□ -2.41
CUX1P39880 ACA59.2-201ENST00000517061 156 ntBASIC0□□□□□ -2.41
CUX1P39880 EIF1P4-201ENST00000572664 335 ntBASIC0□□□□□ -2.41
CUX1P39880 MIR4645-201ENST00000583158 77 ntBASIC0□□□□□ -2.41
CUX1P39880 VN1R88P-201ENST00000596787 292 ntBASIC0□□□□□ -2.41
CUX1P39880 AL590240.4-201ENST00000616908 390 ntBASIC0□□□□□ -2.41
CUX1P39880 MIR520A-201ENST00000384862 85 ntBASIC-0.01□□□□□ -2.41
CUX1P39880 MIR548B-201ENST00000385247 97 ntBASIC-0.01□□□□□ -2.41
CUX1P39880 AC005345.1-201ENST00000431868 217 ntBASIC-0.01□□□□□ -2.41
CUX1P39880 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC-0.01□□□□□ -2.41
CUX1P39880 AL606662.1-201ENST00000445763 553 ntBASIC-0.01□□□□□ -2.41
CUX1P39880 AC116655.1-201ENST00000508324 901 ntBASIC-0.01□□□□□ -2.41
CUX1P39880 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC-0.01□□□□□ -2.41
CUX1P39880 MRPS36P5-201ENST00000551909 298 ntBASIC-0.01□□□□□ -2.41
CUX1P39880 AC098614.4-201ENST00000607601 462 ntBASIC-0.01□□□□□ -2.41
CUX1P39880 AC009032.1-201ENST00000617574 431 ntBASIC-0.01□□□□□ -2.41
CUX1P39880 SEC63P2-201ENST00000503863 1939 ntBASIC-0.02□□□□□ -2.41
CUX1P39880 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC-0.02□□□□□ -2.41
CUX1P39880 MIR214-201ENST00000385214 110 ntBASIC-0.02□□□□□ -2.41
CUX1P39880 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC-0.02□□□□□ -2.41
CUX1P39880 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC-0.02□□□□□ -2.41
CUX1P39880 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC-0.02□□□□□ -2.41
CUX1P39880 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC-0.02□□□□□ -2.41
CUX1P39880 HMGN2P22-201ENST00000427588 175 ntBASIC-0.02□□□□□ -2.41
CUX1P39880 SNORD79.1-201ENST00000516069 84 ntBASIC-0.02□□□□□ -2.41
CUX1P39880 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC-0.02□□□□□ -2.41
CUX1P39880 AC093027.1-201ENST00000546698 429 ntBASIC-0.02□□□□□ -2.41
CUX1P39880 Z98751.3-201ENST00000604447 521 ntBASIC-0.02□□□□□ -2.41
CUX1P39880 AL133445.2-201ENST00000611191 527 ntBASIC-0.02□□□□□ -2.41
CUX1P39880 AC130324.3-201ENST00000614165 542 ntBASIC-0.02□□□□□ -2.41
CUX1P39880 AC120349.3-201ENST00000624377 529 ntBASIC-0.02□□□□□ -2.41
CUX1P39880 ANKRD36BP1-202ENST00000604892 1417 ntBASIC-0.02□□□□□ -2.41
CUX1P39880 RNU4-79P-201ENST00000362764 141 ntBASIC-0.03□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 156.4 ms