Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
SENP3Q9H4L4 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC8.18□□□□□ -1.1
SENP3Q9H4L4 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
SENP3Q9H4L4 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
SENP3Q9H4L4 RNU6-669P-201ENST00000365575 107 ntBASIC8.18□□□□□ -1.1
SENP3Q9H4L4 SNORA16A-201ENST00000384342 137 ntBASIC8.18□□□□□ -1.1
SENP3Q9H4L4 MIR520H-201ENST00000385126 88 ntBASIC8.18□□□□□ -1.1
SENP3Q9H4L4 AC025750.2-201ENST00000442609 450 ntBASIC8.18□□□□□ -1.1
SENP3Q9H4L4 HSPE1P5-201ENST00000561489 272 ntBASIC8.18□□□□□ -1.1
SENP3Q9H4L4 MIR3934-201ENST00000579806 107 ntBASIC8.18□□□□□ -1.1
SENP3Q9H4L4 MIR4260-201ENST00000583107 67 ntBASIC8.18□□□□□ -1.1
SENP3Q9H4L4 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC8.18□□□□□ -1.1
SENP3Q9H4L4 AC090517.3-201ENST00000625170 141 ntBASIC8.18□□□□□ -1.1
SENP3Q9H4L4 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
SENP3Q9H4L4 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC8.18□□□□□ -1.1
SENP3Q9H4L4 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
SENP3Q9H4L4 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
SENP3Q9H4L4 AL049781.1-201ENST00000623195 3585 ntBASIC8.17□□□□□ -1.1
SENP3Q9H4L4 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC8.17□□□□□ -1.1
SENP3Q9H4L4 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
SENP3Q9H4L4 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC8.17□□□□□ -1.1
SENP3Q9H4L4 RNU6-829P-201ENST00000363700 112 ntBASIC8.17□□□□□ -1.1
SENP3Q9H4L4 AC093162.1-201ENST00000419682 124 ntBASIC8.17□□□□□ -1.1
SENP3Q9H4L4 BX284632.1-201ENST00000478218 541 ntBASIC8.17□□□□□ -1.1
SENP3Q9H4L4 RPS21P4-201ENST00000487122 248 ntBASIC8.17□□□□□ -1.1
SENP3Q9H4L4 IGLV2-34-201ENST00000490007 283 ntBASIC8.17□□□□□ -1.1
SENP3Q9H4L4 RNU7-99P-201ENST00000516271 62 ntBASIC8.17□□□□□ -1.1
SENP3Q9H4L4 TRAV8-5-201ENST00000537369 341 ntBASIC8.17□□□□□ -1.1
SENP3Q9H4L4 MTND5P40-201ENST00000559945 246 ntBASIC8.17□□□□□ -1.1
SENP3Q9H4L4 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC8.17□□□□□ -1.1
SENP3Q9H4L4 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC8.17□□□□□ -1.1
SENP3Q9H4L4 AC103706.3-201ENST00000636297 85 ntBASIC8.17□□□□□ -1.1
SENP3Q9H4L4 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
SENP3Q9H4L4 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
SENP3Q9H4L4 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 Y_RNA.264-201ENST00000364665 102 ntBASIC8.16□□□□□ -1.1
SENP3Q9H4L4 Y_RNA.336-201ENST00000365307 109 ntBASIC8.16□□□□□ -1.1
SENP3Q9H4L4 Y_RNA.494-201ENST00000384432 111 ntBASIC8.16□□□□□ -1.1
SENP3Q9H4L4 SNORA2B-201ENST00000384583 137 ntBASIC8.16□□□□□ -1.1
SENP3Q9H4L4 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 AL109933.2-201ENST00000452651 260 ntBASIC8.16□□□□□ -1.1
SENP3Q9H4L4 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 RN7SKP18-201ENST00000516005 275 ntBASIC8.16□□□□□ -1.1
SENP3Q9H4L4 SNORD45.4-201ENST00000516629 73 ntBASIC8.16□□□□□ -1.1
SENP3Q9H4L4 MIR4511-201ENST00000582784 87 ntBASIC8.16□□□□□ -1.1
SENP3Q9H4L4 AC000068.2-201ENST00000608816 460 ntBASIC8.16□□□□□ -1.1
SENP3Q9H4L4 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SENP3Q9H4L4 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
SENP3Q9H4L4 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
SENP3Q9H4L4 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC8.15□□□□□ -1.1
SENP3Q9H4L4 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC8.15□□□□□ -1.1
SENP3Q9H4L4 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC8.15□□□□□ -1.1
SENP3Q9H4L4 SNORA8.1-201ENST00000384250 140 ntBASIC8.15□□□□□ -1.1
SENP3Q9H4L4 HMGN2P34-201ENST00000437647 269 ntBASIC8.15□□□□□ -1.1
SENP3Q9H4L4 AC073308.1-201ENST00000623696 305 ntBASIC8.15□□□□□ -1.1
SENP3Q9H4L4 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
SENP3Q9H4L4 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
SENP3Q9H4L4 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
SENP3Q9H4L4 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
SENP3Q9H4L4 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.11
SENP3Q9H4L4 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 RNA5SP502-201ENST00000362694 119 ntBASIC8.14□□□□□ -1.11
SENP3Q9H4L4 RNA5SP133-201ENST00000363368 119 ntBASIC8.14□□□□□ -1.11
SENP3Q9H4L4 SNORD38.2-201ENST00000384470 69 ntBASIC8.14□□□□□ -1.11
SENP3Q9H4L4 RNU6ATAC21P-201ENST00000408656 126 ntBASIC8.14□□□□□ -1.11
SENP3Q9H4L4 RN7SKP202-201ENST00000410439 330 ntBASIC8.14□□□□□ -1.11
SENP3Q9H4L4 RN7SL583P-201ENST00000475692 287 ntBASIC8.14□□□□□ -1.11
SENP3Q9H4L4 AC126177.5-201ENST00000549599 178 ntBASIC8.14□□□□□ -1.11
SENP3Q9H4L4 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
SENP3Q9H4L4 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
SENP3Q9H4L4 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
SENP3Q9H4L4 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
SENP3Q9H4L4 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
SENP3Q9H4L4 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
SENP3Q9H4L4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
SENP3Q9H4L4 AC009238.2-201ENST00000431026 355 ntBASIC8.13□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms