Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 Z94722.1-201ENST00000604328 474 ntBASIC1.7□□□□□ -2.14
TRIM40Q6P9F5 AC006566.1-201ENST00000608943 513 ntBASIC1.7□□□□□ -2.14
TRIM40Q6P9F5 AC063944.3-201ENST00000609969 533 ntBASIC1.7□□□□□ -2.14
TRIM40Q6P9F5 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.7□□□□□ -2.14
TRIM40Q6P9F5 Z69720.2-201ENST00000624755 279 ntBASIC1.7□□□□□ -2.14
TRIM40Q6P9F5 SEPT14P19-203ENST00000633205 211 ntBASIC1.7□□□□□ -2.14
TRIM40Q6P9F5 CENPCP1-201ENST00000533085 2578 ntBASIC1.7□□□□□ -2.14
TRIM40Q6P9F5 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.7□□□□□ -2.14
TRIM40Q6P9F5 ZNF702P-202ENST00000434269 1966 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 RNA5SP276-201ENST00000362580 94 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 RNU6-715P-201ENST00000365204 103 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 MIR518A2-201ENST00000384966 87 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 MIR29B2-201ENST00000385055 81 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 MIR9-3-201ENST00000385084 90 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 RNA5SP450-201ENST00000411206 102 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 USP9YP18-201ENST00000425912 695 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 RPS6P15-201ENST00000431996 751 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AL596276.1-201ENST00000434465 418 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AC079448.1-201ENST00000449377 373 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AL353752.1-201ENST00000454946 260 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AC006512.1-201ENST00000468816 291 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 MTND3P7-201ENST00000474435 343 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AC104564.1-201ENST00000493028 407 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 MTCO3P28-201ENST00000513351 515 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 RNA5SP503-201ENST00000517047 117 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AL136363.2-201ENST00000604173 851 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AC025811.1-201ENST00000604312 472 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 Z82243.1-201ENST00000609432 473 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AL627230.6-201ENST00000611129 280 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 AC241585.2-209ENST00000638217 143 ntBASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.69□□□□□ -2.14
TRIM40Q6P9F5 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 RNU6-944P-201ENST00000364023 107 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 RNU6-546P-201ENST00000383991 107 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 RNU6-1029P-201ENST00000384109 107 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 RNU6-611P-201ENST00000384276 104 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 SNORA26.9-201ENST00000391322 122 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AL049545.1-201ENST00000401856 572 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AL512604.1-201ENST00000404812 257 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 MIR1294-201ENST00000408503 142 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 RNU4-46P-201ENST00000410818 138 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AC092447.3-201ENST00000426027 686 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AL669831.1-202ENST00000428504 417 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AC133104.1-201ENST00000429100 218 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AL591806.2-201ENST00000433122 173 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 RPL7P54-201ENST00000438336 674 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 GTF2IP13-201ENST00000438487 386 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 RPL23AP3-201ENST00000453844 468 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 RPL30P1-201ENST00000488676 339 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 RPS29P11-201ENST00000496507 171 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 RPL23AP63-201ENST00000498752 471 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 RNU6-1178P-201ENST00000516674 107 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AC018630.3-201ENST00000542637 96 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AC011494.1-201ENST00000596454 237 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 Z84480.1-201ENST00000605131 311 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 MIR6845-201ENST00000613182 61 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AC084768.2-201ENST00000622736 221 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 U4.7-201ENST00000638126 106 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 AC008555.8-201ENST00000623602 2168 ntBASIC1.68□□□□□ -2.14
TRIM40Q6P9F5 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 snoU2_19.1-201ENST00000362361 80 ntBASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 U3.4-201ENST00000363352 213 ntBASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 Y_RNA.201-201ENST00000364052 96 ntBASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 Y_RNA.324-201ENST00000365165 102 ntBASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 RNU6-282P-201ENST00000365357 103 ntBASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 RNU4-48P-201ENST00000365559 182 ntBASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 BX295541.1-201ENST00000417774 250 ntBASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 AL591043.1-201ENST00000432461 424 ntBASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 RPL39P29-201ENST00000447779 157 ntBASIC1.67□□□□□ -2.14
TRIM40Q6P9F5 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms