Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC018630.3-201ENST00000542637 96 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 MIR4305-201ENST00000583252 102 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC0.24□□□□□ -2.37
CHD9Q3L8U1 AC011451.2-201ENST00000604303 598 ntBASIC0.24□□□□□ -2.37
CHD9Q3L8U1 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AC092447.10-201ENST00000620607 1652 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AL359704.1-201ENST00000411586 781 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 BTF3L4P3-201ENST00000418879 476 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AL606517.1-201ENST00000446914 387 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AC048334.1-201ENST00000477975 159 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 RPL7P43-201ENST00000478876 753 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 Y_RNA.654-201ENST00000497848 106 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 LAMTOR3P2-201ENST00000504479 232 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 RNU6-528P-201ENST00000516926 100 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 COPS8P3-201ENST00000526024 482 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AP001893.2-201ENST00000526949 202 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AC079598.5-201ENST00000547460 117 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.23□□□□□ -2.37
CHD9Q3L8U1 MIR198-201ENST00000637333 62 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 RNU6-778P-201ENST00000363269 103 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 MTCO3P1-205ENST00000422088 832 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 RPS29P8-201ENST00000445109 171 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 OFD1P3Y-201ENST00000453312 783 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AC116655.1-201ENST00000508324 901 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC0.23□□□□□ -2.37
CHD9Q3L8U1 RNU6-885P-201ENST00000516607 104 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 SNORA62.5-201ENST00000516634 120 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.23□□□□□ -2.37
CHD9Q3L8U1 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AC136618.2-201ENST00000575091 400 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 AL353997.4-201ENST00000586196 166 ntBASIC0.23□□□□□ -2.37
CHD9Q3L8U1 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.22□□□□□ -2.37
CHD9Q3L8U1 RNU6-26P-201ENST00000383985 107 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 Y_RNA.453-201ENST00000384223 109 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 RNU6-45P-201ENST00000384471 107 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 RNU6-1184P-201ENST00000384588 108 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 RN7SKP142-201ENST00000411236 328 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.22□□□□□ -2.37
CHD9Q3L8U1 AL096829.2-201ENST00000446582 742 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 RNU6-416P-201ENST00000516265 103 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 RNA5SP168-201ENST00000516642 112 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 AL365434.2-201ENST00000607979 234 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 MTND1P37-201ENST00000636562 264 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 AC100810.6-201ENST00000638068 285 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 RNU6-858P-201ENST00000362436 107 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 RNU6-160P-201ENST00000384591 107 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 RNU6-700P-201ENST00000391043 107 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 CCDC58P2-201ENST00000417131 366 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC0.22□□□□□ -2.37
CHD9Q3L8U1 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC0.22□□□□□ -2.37
CHD9Q3L8U1 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC0.22□□□□□ -2.37
CHD9Q3L8U1 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.22□□□□□ -2.37
CHD9Q3L8U1 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.22□□□□□ -2.37
CHD9Q3L8U1 RPL30P1-201ENST00000488676 339 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC0.22□□□□□ -2.37
CHD9Q3L8U1 AC009646.1-201ENST00000510455 318 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 RNU5B-3P-201ENST00000516601 115 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 RNU6-965P-201ENST00000516721 96 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 SNORA31.17-201ENST00000516953 127 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 AC138915.2-201ENST00000569776 97 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 SNRPGP20-201ENST00000604477 205 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 Z82243.1-201ENST00000609432 473 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 uc_338.17-201ENST00000619633 179 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 AC009033.1-201ENST00000624279 431 ntBASIC0.22□□□□□ -2.37
CHD9Q3L8U1 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.22□□□□□ -2.37
CHD9Q3L8U1 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.21□□□□□ -2.38
CHD9Q3L8U1 RNU6-833P-201ENST00000363486 107 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 SNORA27.3-201ENST00000364937 134 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 RNU4-12P-201ENST00000365233 139 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 MIR16-1-201ENST00000385271 89 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AL117342.1-201ENST00000404861 406 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 RNU6-1064P-201ENST00000410626 104 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 SNX3P1X-201ENST00000414887 175 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 RPS3AP37-201ENST00000419176 745 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AL139421.1-201ENST00000423010 169 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC093422.3-201ENST00000428506 305 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC0.21□□□□□ -2.38
CHD9Q3L8U1 RNU7-90P-201ENST00000459216 62 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC0.21□□□□□ -2.38
CHD9Q3L8U1 SNORA70.22-201ENST00000517160 124 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC022616.8-201ENST00000533569 253 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC0.21□□□□□ -2.38
CHD9Q3L8U1 NIFKP6-201ENST00000598115 845 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 Z83818.1-201ENST00000603584 150 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC107905.1-201ENST00000616204 426 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC138627.2-201ENST00000624202 601 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC138393.1-203ENST00000327086 343 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 MIR608-201ENST00000384820 100 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 SNORA40C-201ENST00000391285 128 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 RNA5SP118-201ENST00000410385 109 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 RPL37P21-201ENST00000435890 276 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms