Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.78
SF3A1Q15459 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.9□□□□□ -1.78
SF3A1Q15459 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.9□□□□□ -1.78
SF3A1Q15459 SNORD50.1-201ENST00000362987 71 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 Y_RNA.146-201ENST00000363549 102 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 SNORA68.1-201ENST00000364537 132 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 RNU6-890P-201ENST00000384121 107 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 MIR483-201ENST00000385070 76 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 AL513477.1-202ENST00000417061 214 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 SAR1AP4-201ENST00000429225 591 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 RPS3AP12-201ENST00000443616 753 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 HMGN1P18-201ENST00000457642 277 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 AC025518.1-201ENST00000479856 347 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 AC106707.2-201ENST00000484182 374 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.9□□□□□ -1.79
SF3A1Q15459 COX6CP5-201ENST00000527162 228 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 CBX3P8-201ENST00000532412 525 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 AC009318.2-201ENST00000610917 651 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 AC091953.5-201ENST00000622919 233 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 MIR7153-201ENST00000637758 57 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 AC233981.2-201ENST00000611524 1614 ntBASIC3.9□□□□□ -1.79
SF3A1Q15459 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.79
SF3A1Q15459 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SF3A1Q15459 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SF3A1Q15459 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SF3A1Q15459 RNU6-655P-201ENST00000362858 107 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 RNU6-529P-201ENST00000363383 104 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 RN7SKP61-201ENST00000410642 295 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 AL590135.1-201ENST00000422215 156 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 RPL31P12-201ENST00000422587 358 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 AC019205.3-201ENST00000424573 156 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.89□□□□□ -1.79
SF3A1Q15459 AC016700.2-201ENST00000446011 156 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 ELOCP24-201ENST00000456370 334 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 AC015911.1-201ENST00000495111 156 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 AC005741.1-201ENST00000511094 432 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.89□□□□□ -1.79
SF3A1Q15459 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.89□□□□□ -1.79
SF3A1Q15459 AC093303.1-201ENST00000514549 295 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 RNU2-53P-201ENST00000516257 147 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 AC109329.1-201ENST00000518744 317 ntBASIC3.89□□□□□ -1.79
SF3A1Q15459 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.89□□□□□ -1.79
SF3A1Q15459 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.89□□□□□ -1.79
SF3A1Q15459 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SF3A1Q15459 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SF3A1Q15459 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
SF3A1Q15459 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
SF3A1Q15459 MTND5P10-201ENST00000603719 1809 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.88□□□□□ -1.79
SF3A1Q15459 AC092268.1-201ENST00000342691 405 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 Y_RNA.40-201ENST00000362645 93 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 RNA5SP197-201ENST00000363357 119 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 SNORD17-201ENST00000390930 237 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 SNORA75.6-201ENST00000391318 127 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 RNU6-1328P-201ENST00000410938 106 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 AC096664.2-201ENST00000411843 406 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.88□□□□□ -1.79
SF3A1Q15459 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.88□□□□□ -1.79
SF3A1Q15459 AL353705.4-201ENST00000449661 238 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 RBMY2UP-201ENST00000453474 324 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 RN7SL442P-201ENST00000473804 320 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 RNU6-1170P-201ENST00000515974 106 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.88□□□□□ -1.79
SF3A1Q15459 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.88□□□□□ -1.79
SF3A1Q15459 MRPS36P4-201ENST00000534436 298 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 AL158827.2-201ENST00000602494 330 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 AL670379.2-201ENST00000604983 252 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 AL691447.3-201ENST00000635020 330 ntBASIC3.88□□□□□ -1.79
SF3A1Q15459 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
SF3A1Q15459 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.88□□□□□ -1.79
SF3A1Q15459 AC010329.5-201ENST00000623497 2174 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
SF3A1Q15459 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SF3A1Q15459 ZNF299P-201ENST00000406845 1804 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 RNU4-35P-201ENST00000362588 141 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 RNU6-1285P-201ENST00000363480 105 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 Y_RNA.187-201ENST00000363918 113 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 MIR34B-201ENST00000385076 84 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 CYCSP48-201ENST00000417124 323 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 AF228730.4-201ENST00000421457 183 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 AC078809.1-201ENST00000427601 140 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 AC079354.2-201ENST00000453523 154 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 MIR2053-201ENST00000459295 91 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 AC140059.1-201ENST00000489238 361 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 RNU6-264P-201ENST00000517134 104 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 IGKV2-26-201ENST00000518305 343 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 AC096577.2-201ENST00000611455 153 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 AL159153.1-201ENST00000619688 317 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.87□□□□□ -1.79
SF3A1Q15459 SNORA43.4-201ENST00000629559 138 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 MIR7157-201ENST00000635801 60 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 SNORD98-201ENST00000636377 67 ntBASIC3.87□□□□□ -1.79
SF3A1Q15459 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SF3A1Q15459 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.87□□□□□ -1.79
SF3A1Q15459 AC092435.3-201ENST00000565538 3654 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 AP000560.1-201ENST00000624150 1937 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.86□□□□□ -1.79
SF3A1Q15459 RNU6-1210P-201ENST00000363775 107 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 RNU6-694P-201ENST00000364071 147 ntBASIC3.86□□□□□ -1.79
SF3A1Q15459 RNU4-56P-201ENST00000364700 142 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms