Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AL355802.4-201ENST00000607635 548 ntBASIC-0.2□□□□□ -2.44
APOBP04114 Y_RNA.65-201ENST00000362846 100 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AC078974.1-201ENST00000411597 223 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC-0.21□□□□□ -2.44
APOBP04114 RNU6-1095P-201ENST00000516148 108 ntBASIC-0.21□□□□□ -2.44
APOBP04114 MIR3664-201ENST00000579074 99 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AL391813.1-201ENST00000603098 260 ntBASIC-0.21□□□□□ -2.44
APOBP04114 GHRLOS.1-201ENST00000610995 70 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC-0.21□□□□□ -2.44
APOBP04114 SNORA36.1-201ENST00000363424 132 ntBASIC-0.21□□□□□ -2.44
APOBP04114 SNORA25B-201ENST00000365507 128 ntBASIC-0.21□□□□□ -2.44
APOBP04114 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC-0.21□□□□□ -2.44
APOBP04114 AL589872.1-201ENST00000426602 288 ntBASIC-0.21□□□□□ -2.44
APOBP04114 MTND1P22-201ENST00000510572 951 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AP003066.2-201ENST00000529375 555 ntBASIC-0.21□□□□□ -2.44
APOBP04114 HIGD1AP17-201ENST00000554576 276 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AP000238.1-201ENST00000608759 426 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AL360219.1-201ENST00000610230 366 ntBASIC-0.21□□□□□ -2.44
APOBP04114 RNA5SP128-201ENST00000365305 116 ntBASIC-0.21□□□□□ -2.44
APOBP04114 RNU6-929P-201ENST00000384429 107 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AL590556.1-201ENST00000423231 483 ntBASIC-0.21□□□□□ -2.44
APOBP04114 RPS15AP9-201ENST00000439856 381 ntBASIC-0.21□□□□□ -2.44
APOBP04114 RNFT1P2-201ENST00000443064 757 ntBASIC-0.21□□□□□ -2.44
APOBP04114 MTCO2P25-201ENST00000447065 681 ntBASIC-0.21□□□□□ -2.44
APOBP04114 RNU7-90P-201ENST00000459216 62 ntBASIC-0.21□□□□□ -2.44
APOBP04114 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC-0.21□□□□□ -2.44
APOBP04114 AC092354.1-201ENST00000606057 376 ntBASIC-0.21□□□□□ -2.44
APOBP04114 Y_RNA.493-201ENST00000384422 102 ntBASIC-0.21□□□□□ -2.44
APOBP04114 Z82210.1-201ENST00000440037 231 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AL606662.1-201ENST00000445763 553 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AC091874.1-201ENST00000511402 339 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC-0.21□□□□□ -2.44
APOBP04114 NACAP3-201ENST00000552100 481 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC-0.21□□□□□ -2.44
APOBP04114 ROCK1P1-201ENST00000573767 549 ntBASIC-0.21□□□□□ -2.44
APOBP04114 AC105148.1-201ENST00000604961 409 ntBASIC-0.21□□□□□ -2.44
APOBP04114 RNA5SP100-201ENST00000410903 110 ntBASIC-0.22□□□□□ -2.44
APOBP04114 RNA5SP59-201ENST00000410922 110 ntBASIC-0.22□□□□□ -2.44
APOBP04114 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC-0.22□□□□□ -2.44
APOBP04114 RPL7P55-201ENST00000450522 746 ntBASIC-0.22□□□□□ -2.44
APOBP04114 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC-0.22□□□□□ -2.44
APOBP04114 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC-0.22□□□□□ -2.44
APOBP04114 5S_rRNA.3-201ENST00000517021 110 ntBASIC-0.22□□□□□ -2.44
APOBP04114 AL512310.8-201ENST00000550183 120 ntBASIC-0.22□□□□□ -2.44
APOBP04114 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC-0.22□□□□□ -2.44
APOBP04114 5S_rRNA.19-201ENST00000612131 110 ntBASIC-0.22□□□□□ -2.44
APOBP04114 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC-0.22□□□□□ -2.44
APOBP04114 5S_rRNA.18-201ENST00000621941 110 ntBASIC-0.22□□□□□ -2.44
APOBP04114 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC-0.22□□□□□ -2.44
APOBP04114 RNU6-863P-201ENST00000515989 104 ntBASIC-0.22□□□□□ -2.44
APOBP04114 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC-0.22□□□□□ -2.44
APOBP04114 AC005951.2-201ENST00000576282 495 ntBASIC-0.22□□□□□ -2.44
APOBP04114 BNIP3P23-201ENST00000599655 511 ntBASIC-0.22□□□□□ -2.44
APOBP04114 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC-0.22□□□□□ -2.45
APOBP04114 RNU5A-1-201ENST00000362698 116 ntBASIC-0.22□□□□□ -2.45
APOBP04114 RNU4-79P-201ENST00000362764 141 ntBASIC-0.22□□□□□ -2.45
APOBP04114 RNU6-302P-201ENST00000365249 107 ntBASIC-0.22□□□□□ -2.45
APOBP04114 MIR610-201ENST00000385139 96 ntBASIC-0.22□□□□□ -2.45
APOBP04114 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC-0.22□□□□□ -2.45
APOBP04114 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC-0.22□□□□□ -2.45
APOBP04114 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC-0.22□□□□□ -2.45
APOBP04114 RPS27AP8-201ENST00000452665 445 ntBASIC-0.22□□□□□ -2.45
APOBP04114 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC-0.22□□□□□ -2.45
APOBP04114 AL049714.1-201ENST00000466686 347 ntBASIC-0.22□□□□□ -2.45
APOBP04114 SCARNA15.2-201ENST00000516409 127 ntBASIC-0.22□□□□□ -2.45
APOBP04114 SCARNA3-201ENST00000517097 143 ntBASIC-0.22□□□□□ -2.45
APOBP04114 LSM6P2-201ENST00000552208 177 ntBASIC-0.22□□□□□ -2.45
APOBP04114 AC136618.2-201ENST00000575091 400 ntBASIC-0.22□□□□□ -2.45
APOBP04114 AC138627.2-201ENST00000624202 601 ntBASIC-0.22□□□□□ -2.45
APOBP04114 RNU6-46P-201ENST00000383860 107 ntBASIC-0.23□□□□□ -2.45
APOBP04114 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.23□□□□□ -2.45
APOBP04114 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC-0.23□□□□□ -2.45
APOBP04114 AC023442.1-201ENST00000531247 422 ntBASIC-0.23□□□□□ -2.45
APOBP04114 MIR3681-201ENST00000580089 72 ntBASIC-0.23□□□□□ -2.45
APOBP04114 AL157786.1-207ENST00000627771 695 ntBASIC-0.23□□□□□ -2.45
APOBP04114 MIR4788-201ENST00000639104 80 ntBASIC-0.23□□□□□ -2.45
APOBP04114 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC-0.23□□□□□ -2.45
APOBP04114 AC092268.1-201ENST00000342691 405 ntBASIC-0.23□□□□□ -2.45
APOBP04114 SNORA36.2-201ENST00000384004 127 ntBASIC-0.23□□□□□ -2.45
APOBP04114 AL355796.1-201ENST00000406706 323 ntBASIC-0.23□□□□□ -2.45
APOBP04114 AL590632.1-201ENST00000424289 371 ntBASIC-0.23□□□□□ -2.45
APOBP04114 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC-0.23□□□□□ -2.45
APOBP04114 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC-0.23□□□□□ -2.45
APOBP04114 AL590229.1-201ENST00000603497 542 ntBASIC-0.23□□□□□ -2.45
APOBP04114 RNU6-160P-201ENST00000384591 107 ntBASIC-0.23□□□□□ -2.45
APOBP04114 MIR605-201ENST00000385078 83 ntBASIC-0.23□□□□□ -2.45
APOBP04114 RNU6-750P-201ENST00000390946 107 ntBASIC-0.23□□□□□ -2.45
APOBP04114 RNU6-821P-201ENST00000390995 107 ntBASIC-0.23□□□□□ -2.45
APOBP04114 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC-0.23□□□□□ -2.45
APOBP04114 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC-0.23□□□□□ -2.45
APOBP04114 SNORA77B-201ENST00000578179 125 ntBASIC-0.23□□□□□ -2.45
APOBP04114 AC015688.2-201ENST00000584523 262 ntBASIC-0.23□□□□□ -2.45
APOBP04114 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC-0.23□□□□□ -2.45
APOBP04114 MTND5P32-201ENST00000560711 1802 ntBASIC-0.23□□□□□ -2.45
APOBP04114 Y_RNA.410-201ENST00000383992 113 ntBASIC-0.23□□□□□ -2.45
APOBP04114 RNU6-1293P-201ENST00000384077 107 ntBASIC-0.23□□□□□ -2.45
APOBP04114 AC113410.1-201ENST00000505029 247 ntBASIC-0.23□□□□□ -2.45
APOBP04114 AC026782.1-201ENST00000512952 449 ntBASIC-0.23□□□□□ -2.45
APOBP04114 AC109810.1-201ENST00000534066 224 ntBASIC-0.23□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms