Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RPL9P6-201ENST00000492764 598 ntBASIC2.98□□□□□ -1.93
NPHP1O15259 CCDC34P1-201ENST00000507441 517 ntBASIC2.98□□□□□ -1.93
NPHP1O15259 AC079140.5-201ENST00000507882 310 ntBASIC2.98□□□□□ -1.93
NPHP1O15259 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.98□□□□□ -1.93
NPHP1O15259 SNORA31.15-201ENST00000516771 132 ntBASIC2.98□□□□□ -1.93
NPHP1O15259 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.98□□□□□ -1.93
NPHP1O15259 AC022880.1-201ENST00000534017 973 ntBASIC2.98□□□□□ -1.93
NPHP1O15259 MIR3941-201ENST00000582572 103 ntBASIC2.98□□□□□ -1.93
NPHP1O15259 U2.17-201ENST00000611454 95 ntBASIC2.98□□□□□ -1.93
NPHP1O15259 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.97□□□□□ -1.93
NPHP1O15259 RNU6-105P-201ENST00000363909 104 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 RNU6-1322P-201ENST00000364309 107 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 RNU4-75P-201ENST00000364621 146 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 MIR764-201ENST00000390811 85 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 MTCO3P40-201ENST00000392516 676 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 AL162578.1-201ENST00000406202 378 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 AL606923.1-201ENST00000406616 190 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.97□□□□□ -1.93
NPHP1O15259 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.97□□□□□ -1.93
NPHP1O15259 CYP2C59P-201ENST00000457790 269 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.97□□□□□ -1.93
NPHP1O15259 AC107401.1-201ENST00000503426 685 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.97□□□□□ -1.93
NPHP1O15259 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.97□□□□□ -1.93
NPHP1O15259 RNU1-104P-201ENST00000517280 175 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 AP001893.2-201ENST00000526949 202 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.97□□□□□ -1.93
NPHP1O15259 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.97□□□□□ -1.93
NPHP1O15259 AC093249.1-201ENST00000567049 203 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 AC004908.3-201ENST00000610248 625 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 AC002543.1-201ENST00000299783 1954 ntBASIC2.97□□□□□ -1.93
NPHP1O15259 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.97□□□□□ -1.93
NPHP1O15259 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.96□□□□□ -1.94
NPHP1O15259 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
NPHP1O15259 SNORD114-1-201ENST00000362705 72 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 RNU4-40P-201ENST00000364351 143 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 Y_RNA.436-201ENST00000384097 102 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 SUMO1P4-201ENST00000429430 302 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 AL591043.1-201ENST00000432461 424 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.96□□□□□ -1.94
NPHP1O15259 RPL7P54-201ENST00000438336 674 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 HMGB1P18-201ENST00000438801 619 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 AL121594.1-201ENST00000475906 575 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 CKS1BP2-201ENST00000497342 240 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 MTND4P7-201ENST00000523876 130 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.96□□□□□ -1.94
NPHP1O15259 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.96□□□□□ -1.94
NPHP1O15259 AC103987.3-201ENST00000582071 292 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 APOOP1-201ENST00000604695 592 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 AL355297.2-201ENST00000604792 129 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 HULC.1-201ENST00000612720 240 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 AL159153.1-201ENST00000619688 317 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 AL359880.1-201ENST00000621879 266 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 AC097372.5-201ENST00000623665 376 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.96□□□□□ -1.94
NPHP1O15259 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.96□□□□□ -1.94
NPHP1O15259 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
NPHP1O15259 AC069528.2-201ENST00000624849 1991 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 RNU6-527P-201ENST00000363425 104 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 DEFA7P-201ENST00000382676 285 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
NPHP1O15259 CALM2P3-201ENST00000400429 449 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 RNA5SP181-201ENST00000410246 98 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.95□□□□□ -1.94
NPHP1O15259 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.95□□□□□ -1.94
NPHP1O15259 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.95□□□□□ -1.94
NPHP1O15259 DLGAP5P1-201ENST00000430307 464 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.95□□□□□ -1.94
NPHP1O15259 RNU6-261P-201ENST00000459506 102 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 SRRM1P2-201ENST00000464531 1192 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 RPL30P12-201ENST00000474666 353 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 AC068781.1-201ENST00000488231 618 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC2.95□□□□□ -1.94
NPHP1O15259 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.95□□□□□ -1.94
NPHP1O15259 AC109479.2-201ENST00000517842 174 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.95□□□□□ -1.94
NPHP1O15259 AC090115.3-201ENST00000553218 849 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 SNORD14A-201ENST00000606526 91 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 AC104237.2-201ENST00000612456 443 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
NPHP1O15259 AC007792.1-201ENST00000623023 402 ntBASIC2.95□□□□□ -1.94
NPHP1O15259 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
NPHP1O15259 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.94□□□□□ -1.94
NPHP1O15259 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.94□□□□□ -1.94
NPHP1O15259 RNU6-655P-201ENST00000362858 107 ntBASIC2.94□□□□□ -1.94
NPHP1O15259 RNU6-1032P-201ENST00000384100 107 ntBASIC2.94□□□□□ -1.94
NPHP1O15259 Y_RNA.481-201ENST00000384373 102 ntBASIC2.94□□□□□ -1.94
NPHP1O15259 RNU1-148P-201ENST00000384472 162 ntBASIC2.94□□□□□ -1.94
NPHP1O15259 RNU6-482P-201ENST00000391068 107 ntBASIC2.94□□□□□ -1.94
NPHP1O15259 AIMP1P2-201ENST00000425294 312 ntBASIC2.94□□□□□ -1.94
NPHP1O15259 VN1R108P-201ENST00000431580 830 ntBASIC2.94□□□□□ -1.94
NPHP1O15259 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.94□□□□□ -1.94
NPHP1O15259 USP9YP8-201ENST00000441913 500 ntBASIC2.94□□□□□ -1.94
NPHP1O15259 AC013470.1-201ENST00000453438 462 ntBASIC2.94□□□□□ -1.94
NPHP1O15259 RNU6-377P-201ENST00000515965 102 ntBASIC2.94□□□□□ -1.94
NPHP1O15259 SNORA48.11-201ENST00000517015 89 ntBASIC2.94□□□□□ -1.94
NPHP1O15259 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.94□□□□□ -1.94
NPHP1O15259 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.94□□□□□ -1.94
NPHP1O15259 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.94□□□□□ -1.94
NPHP1O15259 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 148.6 ms