Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-1328P-201ENST00000410938 106 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 Z96811.1-201ENST00000445880 108 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 MTND4P17-201ENST00000470444 350 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 RNA5SP356-201ENST00000515972 94 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 RNU6-1016P-201ENST00000516689 94 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 AC115990.1-201ENST00000526957 301 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 AC073657.2-201ENST00000605661 303 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 AC018555.1-201ENST00000567548 1980 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 AC009541.1-201ENST00000438279 2662 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 U3.13-201ENST00000364804 214 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 RNU6-601P-201ENST00000384540 107 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 MIR186-201ENST00000384988 86 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 AC146507.2-201ENST00000460608 476 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 RN7SL594P-201ENST00000470590 287 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 RPL23AP70-201ENST00000483361 460 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 PTP4A1P4-201ENST00000512479 322 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 RN7SKP282-201ENST00000516824 299 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 RN7SKP209-201ENST00000516888 304 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 HPRT1P3-201ENST00000539521 576 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 AC004832.5-201ENST00000608677 401 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 IGHVIII-44-202ENST00000636235 289 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 AC080128.1-201ENST00000474389 1917 ntBASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
CCDC9Q9Y3X0 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 U3.39-201ENST00000408569 239 ntBASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 AC245054.2-201ENST00000415639 319 ntBASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 AC008549.1-201ENST00000512900 643 ntBASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 HSPE1P4-201ENST00000550617 308 ntBASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 IMMP1LP2-201ENST00000552954 492 ntBASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 AC113139.1-201ENST00000605049 239 ntBASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 AC069234.5-201ENST00000611056 416 ntBASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC9Q9Y3X0 AL136360.1-201ENST00000503377 1900 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AL356274.2-201ENST00000624379 3752 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 Y_RNA.482-201ENST00000384377 111 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AL133396.1-201ENST00000432048 687 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AL353705.1-201ENST00000433468 480 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 RPS12P18-201ENST00000442381 270 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 SNRPEP8-201ENST00000442866 260 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AL031659.1-201ENST00000447075 539 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 RPS26P21-201ENST00000475397 348 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 RPS26P15-201ENST00000488067 348 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AC023141.11-201ENST00000508864 202 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AC008885.1-201ENST00000514930 301 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AC007375.1-201ENST00000554513 578 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AC027176.1-201ENST00000560204 514 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AL360157.1-201ENST00000565962 87 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AC078795.3-201ENST00000602913 472 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AL132765.2-201ENST00000610812 351 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AC009233.1-201ENST00000616477 371 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 MIR1302-1-201ENST00000637932 143 ntBASIC4.42□□□□□ -1.7
CCDC9Q9Y3X0 AL035425.3-201ENST00000564206 4996 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 RNU6-655P-201ENST00000362858 107 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 RNU6-461P-201ENST00000364195 107 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 SNORD32A-201ENST00000364805 84 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 MIR627-201ENST00000384979 97 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 RPL30P4-201ENST00000429309 333 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 RPS29P27-201ENST00000463711 170 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 AC008571.1-201ENST00000467232 300 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 GTF3AP2-201ENST00000557014 266 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 RPS3AP23-202ENST00000574601 686 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms