Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RN7SKP132-201ENST00000516001 208 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 RNA5SP282-201ENST00000516355 108 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 RNA5SP137-201ENST00000516833 135 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 SNORA31.25-201ENST00000517242 134 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AC107953.1-201ENST00000522216 297 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 MIR4529-201ENST00000578110 78 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 BNIP3P16-201ENST00000589779 534 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AC007229.1-201ENST00000590455 412 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AL033523.1-201ENST00000605153 153 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AC004908.3-201ENST00000610248 625 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 Z99129.1-201ENST00000612510 255 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AC092608.2-201ENST00000624427 218 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 MIR6863-201ENST00000636112 90 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
FOXA2Q9Y261 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
FOXA2Q9Y261 SNORA6-201ENST00000384033 151 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 MIR196B-201ENST00000384852 84 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
FOXA2Q9Y261 RNU6-1106P-201ENST00000390845 107 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 RNA5SP219-201ENST00000390940 113 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 RNA5SP184-201ENST00000411071 108 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 HMGB3P2-201ENST00000411913 584 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXA2Q9Y261 RPLP0P7-201ENST00000416050 667 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.07□□□□□ -2.08
FOXA2Q9Y261 USP9YP20-201ENST00000419224 558 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 USP9YP18-201ENST00000425912 695 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 RPS15AP10-201ENST00000432472 382 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 RPL7P54-201ENST00000438336 674 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.07□□□□□ -2.08
FOXA2Q9Y261 MTND1P29-201ENST00000448112 647 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.07□□□□□ -2.08
FOXA2Q9Y261 RNA5SP401-201ENST00000515920 127 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 SNORA40.12-201ENST00000516329 111 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 RNA5SP82-201ENST00000516707 92 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 NDUFA5P6-201ENST00000542110 379 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 MIR4319-201ENST00000577285 85 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 AC103987.3-201ENST00000582071 292 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 AC078899.2-201ENST00000595282 212 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 SNRPGP17-201ENST00000603780 214 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 RNU6-85P-201ENST00000605989 107 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 AC063943.3-201ENST00000615562 356 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 OR5AK4P-201ENST00000635912 903 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 AC241585.2-209ENST00000638217 143 ntBASIC2.07□□□□□ -2.08
FOXA2Q9Y261 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.07□□□□□ -2.08
FOXA2Q9Y261 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.07□□□□□ -2.08
FOXA2Q9Y261 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
FOXA2Q9Y261 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
FOXA2Q9Y261 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.06□□□□□ -2.08
FOXA2Q9Y261 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
FOXA2Q9Y261 SNORD62.1-201ENST00000362541 86 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 RNU6-944P-201ENST00000364023 107 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 RNU6-1322P-201ENST00000364309 107 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 RNU6-827P-201ENST00000365553 106 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 Y_RNA.409-201ENST00000383990 98 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 RNU6-259P-201ENST00000383999 107 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 RNU6-692P-201ENST00000384496 107 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 AL162578.1-201ENST00000406202 378 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 Y_RNA.597-201ENST00000410463 100 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 RNU2-66P-201ENST00000410650 161 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 AL117339.3-201ENST00000418733 162 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.06□□□□□ -2.08
FOXA2Q9Y261 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
FOXA2Q9Y261 USP9YP14-201ENST00000430663 563 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 RPL32P28-201ENST00000443577 397 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 MTATP6P26-201ENST00000445926 662 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 AL137159.1-201ENST00000452808 512 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 AC013470.1-201ENST00000453438 462 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
FOXA2Q9Y261 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.06□□□□□ -2.08
FOXA2Q9Y261 SRRM1P2-201ENST00000464531 1192 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 RPS27P27-201ENST00000498779 255 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 AC093534.1-201ENST00000504977 132 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 RNU5F-2P-201ENST00000516066 82 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.06□□□□□ -2.08
FOXA2Q9Y261 COPS8P3-201ENST00000526024 482 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 CYCSP27-201ENST00000527643 293 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 AC022616.8-201ENST00000533569 253 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 AC103996.1-201ENST00000555468 102 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 MIR5694-201ENST00000581190 76 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 AC017083.3-201ENST00000609955 700 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 HULC.1-201ENST00000612720 240 ntBASIC2.06□□□□□ -2.08
FOXA2Q9Y261 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
FOXA2Q9Y261 AC062016.1-201ENST00000355719 319 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.05□□□□□ -2.08
FOXA2Q9Y261 Y_RNA.481-201ENST00000384373 102 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 MIR634-201ENST00000385208 97 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 AL356057.3-201ENST00000402607 340 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 AL355497.1-201ENST00000406262 551 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.05□□□□□ -2.08
FOXA2Q9Y261 FDX1P2-201ENST00000450769 375 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.05□□□□□ -2.08
FOXA2Q9Y261 RNU6-261P-201ENST00000459506 102 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms