Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 SNORD114-30-201ENST00000364448 72 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 RNU6-38P-201ENST00000384085 107 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 RNU6-1215P-201ENST00000384441 102 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 RNU6-843P-201ENST00000384454 104 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 SNORD116-20-201ENST00000384529 92 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 Y_RNA.554-201ENST00000384672 102 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 MIR218-1-201ENST00000384999 110 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 AL590002.1-201ENST00000406554 418 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 TOMM20P4-201ENST00000427861 435 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 RNU6-333P-201ENST00000459117 107 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 RPL22P13-201ENST00000493291 347 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 RNA5SP281-201ENST00000516504 135 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 CR383656.8-201ENST00000549046 145 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 AC090115.3-201ENST00000553218 849 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 SNORD53-201ENST00000579969 78 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 U2.17-201ENST00000611454 95 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 AC245884.12-201ENST00000615364 59 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-37P-201ENST00000362692 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-1090P-201ENST00000364065 94 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-11P-201ENST00000364234 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-25P-201ENST00000383873 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-1-201ENST00000383898 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-48P-201ENST00000384161 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-36P-201ENST00000384172 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-4P-201ENST00000384205 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-5P-201ENST00000384238 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-3P-201ENST00000384314 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 Y_RNA.480-201ENST00000384364 102 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-16P-201ENST00000384385 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-15P-201ENST00000384534 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-2-201ENST00000384627 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-29P-201ENST00000384637 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-9-201ENST00000384776 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-33P-201ENST00000384793 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 MIR181A1-201ENST00000385026 110 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 SNORD37.1-201ENST00000390968 65 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-908P-201ENST00000410160 94 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-1140P-201ENST00000410517 106 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-1068P-201ENST00000410958 103 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RPS15AP28-201ENST00000435088 386 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 AL121601.2-201ENST00000438019 707 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 AL139109.1-201ENST00000455491 297 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 AC112771.1-201ENST00000463581 102 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 MTCO3P38-201ENST00000468910 766 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 AC087884.1-201ENST00000469738 328 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 AP001025.1-201ENST00000486139 332 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 AC018437.1-201ENST00000492214 406 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 AC008413.1-201ENST00000511864 177 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-1281P-201ENST00000516223 105 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-1038P-201ENST00000516516 104 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 SNORA31.23-201ENST00000517219 133 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 OR11H5P-201ENST00000554039 926 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 AC027807.1-201ENST00000559921 996 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 MIR4435-1-201ENST00000582552 80 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 AL121917.1-203ENST00000605534 577 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-6P-201ENST00000606623 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 RNU6-91P-201ENST00000607774 107 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 YWHAEP7-203ENST00000622054 312 ntBASIC2.51□□□□□ -2.01
CPSF3Q9UKF6 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 MIR524-201ENST00000385242 87 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 MTCO1P21-201ENST00000416634 589 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AC011753.1-201ENST00000451001 220 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 RPL36AP48-201ENST00000485521 314 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 MTCYBP40-201ENST00000509390 1135 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AC010486.1-201ENST00000511793 424 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AC008549.1-201ENST00000512900 643 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AC023050.3-201ENST00000541142 333 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AC079598.5-201ENST00000547460 117 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 RPS15AP11-201ENST00000594193 385 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AL162413.1-201ENST00000603198 110 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AC021646.1-201ENST00000605469 484 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 MIR3529-201ENST00000637713 78 ntBASIC2.5□□□□□ -2.01
CPSF3Q9UKF6 MIR1321-201ENST00000637766 79 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 185.2 ms