Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC116655.1-201ENST00000508324 901 ntBASIC0.78□□□□□ -2.28
SCN3AQ9NY46 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.78□□□□□ -2.28
SCN3AQ9NY46 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.78□□□□□ -2.28
SCN3AQ9NY46 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.78□□□□□ -2.28
SCN3AQ9NY46 MTND3P13-201ENST00000574391 343 ntBASIC0.78□□□□□ -2.28
SCN3AQ9NY46 AL355802.3-201ENST00000607571 545 ntBASIC0.78□□□□□ -2.28
SCN3AQ9NY46 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC0.78□□□□□ -2.28
SCN3AQ9NY46 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.78□□□□□ -2.28
SCN3AQ9NY46 SCARNA4-202ENST00000625402 129 ntBASIC0.78□□□□□ -2.28
SCN3AQ9NY46 RNU6-414P-201ENST00000363705 104 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 RNA5SP493-201ENST00000364115 91 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 RNU6-395P-201ENST00000365662 106 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 RNA5SP100-201ENST00000410903 110 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 RNA5SP59-201ENST00000410922 110 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC0.77□□□□□ -2.29
SCN3AQ9NY46 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AL606517.1-201ENST00000446914 387 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC0.77□□□□□ -2.29
SCN3AQ9NY46 PTENP1-201ENST00000447117 1215 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 RPL39P29-201ENST00000447779 157 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AC108729.1-201ENST00000487812 947 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC0.77□□□□□ -2.29
SCN3AQ9NY46 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 CYCSP23-201ENST00000519781 313 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AC010376.1-201ENST00000522101 334 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AC004908.3-201ENST00000610248 625 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AL512427.1-201ENST00000618593 349 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 U1.36-201ENST00000620684 176 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 RBBP8P1-201ENST00000449447 1844 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 RNU5A-8P-201ENST00000364102 114 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 RNU4-41P-201ENST00000364426 143 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 MTCO1P17-201ENST00000411522 491 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 MRPL35P3-201ENST00000421557 364 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 MTND4P25-201ENST00000441039 533 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AL035666.1-201ENST00000446195 348 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AC093899.1-201ENST00000457984 376 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AC114801.2-201ENST00000503825 781 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 MTCYBP40-201ENST00000509390 1135 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 RNU2-53P-201ENST00000516257 147 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.77□□□□□ -2.29
SCN3AQ9NY46 MIR15A-201ENST00000607334 83 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.77□□□□□ -2.29
SCN3AQ9NY46 AC013470.4-201ENST00000619978 986 ntBASIC0.77□□□□□ -2.29
SCN3AQ9NY46 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.77□□□□□ -2.29
SCN3AQ9NY46 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC0.76□□□□□ -2.29
SCN3AQ9NY46 MTCO2P1-201ENST00000424648 477 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 RNA5SP269-201ENST00000459032 137 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AC093012.1-202ENST00000549403 582 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 MIR3937-201ENST00000580135 106 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AC112220.3-201ENST00000605502 502 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
SCN3AQ9NY46 SNORA75B-201ENST00000384053 137 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
SCN3AQ9NY46 SNORA12-201ENST00000391162 147 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.76□□□□□ -2.29
SCN3AQ9NY46 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AC093259.1-201ENST00000509755 300 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AP001485.1-201ENST00000604799 199 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AC090186.1-201ENST00000605991 572 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 RNU6-1192P-201ENST00000612197 107 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AC023158.2-201ENST00000614876 543 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 RNU6-489P-201ENST00000618289 107 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 AL136313.1-201ENST00000624804 202 ntBASIC0.76□□□□□ -2.29
SCN3AQ9NY46 Y_RNA.67-201ENST00000362870 100 ntBASIC0.75□□□□□ -2.29
SCN3AQ9NY46 RNY3P13-201ENST00000365542 102 ntBASIC0.75□□□□□ -2.29
SCN3AQ9NY46 RNU5E-6P-201ENST00000365574 115 ntBASIC0.75□□□□□ -2.29
SCN3AQ9NY46 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.75□□□□□ -2.29
SCN3AQ9NY46 Y_RNA.597-201ENST00000410463 100 ntBASIC0.75□□□□□ -2.29
SCN3AQ9NY46 AC004941.2-201ENST00000427009 228 ntBASIC0.75□□□□□ -2.29
SCN3AQ9NY46 RPS23P4-201ENST00000487908 423 ntBASIC0.75□□□□□ -2.29
SCN3AQ9NY46 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.75□□□□□ -2.29
SCN3AQ9NY46 MTCO3P9-201ENST00000506989 781 ntBASIC0.75□□□□□ -2.29
SCN3AQ9NY46 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.75□□□□□ -2.29
SCN3AQ9NY46 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.75□□□□□ -2.29
SCN3AQ9NY46 Y_RNA.689-201ENST00000516589 107 ntBASIC0.75□□□□□ -2.29
SCN3AQ9NY46 MIR1273C-201ENST00000578669 77 ntBASIC0.75□□□□□ -2.29
SCN3AQ9NY46 AC093788.1-201ENST00000609356 927 ntBASIC0.75□□□□□ -2.29
SCN3AQ9NY46 AC068880.4-201ENST00000623082 495 ntBASIC0.75□□□□□ -2.29
SCN3AQ9NY46 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.75□□□□□ -2.29
SCN3AQ9NY46 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.74□□□□□ -2.29
SCN3AQ9NY46 ERHP2-201ENST00000402323 299 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 Y_RNA.623-201ENST00000411128 95 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 NEFMP1-201ENST00000443423 1006 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC0.74□□□□□ -2.29
SCN3AQ9NY46 RPL30P7-201ENST00000479312 323 ntBASIC0.74□□□□□ -2.29
SCN3AQ9NY46 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms