Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 MIR5701-1-201ENST00000585138 82 ntBASIC3.17□□□□□ -1.9
TIMP4Q99727 AL390123.1-201ENST00000603216 237 ntBASIC3.17□□□□□ -1.9
TIMP4Q99727 MIR5701-2-201ENST00000615634 82 ntBASIC3.17□□□□□ -1.9
TIMP4Q99727 XIST_intron.1-201ENST00000619444 68 ntBASIC3.17□□□□□ -1.9
TIMP4Q99727 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.17□□□□□ -1.9
TIMP4Q99727 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
TIMP4Q99727 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.17□□□□□ -1.9
TIMP4Q99727 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
TIMP4Q99727 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
TIMP4Q99727 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.16□□□□□ -1.9
TIMP4Q99727 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.16□□□□□ -1.9
TIMP4Q99727 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TIMP4Q99727 RNU4-35P-201ENST00000362588 141 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 RNU5E-7P-201ENST00000365290 117 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 DEFB109C-201ENST00000382575 264 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 DEFB109B-201ENST00000382656 264 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 Y_RNA.471-201ENST00000384312 102 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 RNVU1-14-201ENST00000384770 164 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 Y_RNA.592-201ENST00000410274 109 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 RNU2-38P-201ENST00000410856 79 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 MTCO3P29-201ENST00000432119 779 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 VDAC1P3-201ENST00000434069 851 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.16□□□□□ -1.9
TIMP4Q99727 AC009237.8-201ENST00000445492 379 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 HMGB3P8-201ENST00000449709 577 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.16□□□□□ -1.9
TIMP4Q99727 AL136097.1-201ENST00000456945 913 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 SNORD127-201ENST00000458892 86 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 RNU6-570P-201ENST00000517051 105 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 AC109479.2-201ENST00000517842 174 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.16□□□□□ -1.9
TIMP4Q99727 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.16□□□□□ -1.9
TIMP4Q99727 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.16□□□□□ -1.9
TIMP4Q99727 MIR3128-201ENST00000581957 66 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.16□□□□□ -1.9
TIMP4Q99727 AC009318.2-201ENST00000610917 651 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 AC096577.2-201ENST00000611455 153 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 AC099506.2-201ENST00000623074 221 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 AC008568.2-201ENST00000623862 2313 ntBASIC3.16□□□□□ -1.9
TIMP4Q99727 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
TIMP4Q99727 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
TIMP4Q99727 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.16□□□□□ -1.9
TIMP4Q99727 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
TIMP4Q99727 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
TIMP4Q99727 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.15□□□□□ -1.9
TIMP4Q99727 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.15□□□□□ -1.9
TIMP4Q99727 Y_RNA.123-201ENST00000363338 102 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 SNORD17-201ENST00000390930 237 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 RN7SKP53-201ENST00000411337 315 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.15□□□□□ -1.91
TIMP4Q99727 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.15□□□□□ -1.91
TIMP4Q99727 RNU7-87P-201ENST00000459343 62 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 RPL21P10-201ENST00000463521 490 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 RPL23AP14-201ENST00000468281 468 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.15□□□□□ -1.91
TIMP4Q99727 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.15□□□□□ -1.91
TIMP4Q99727 RN7SKP289-201ENST00000517244 295 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.15□□□□□ -1.91
TIMP4Q99727 AL590705.4-201ENST00000532209 134 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.15□□□□□ -1.91
TIMP4Q99727 TRAV28-201ENST00000557548 323 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 MIR5047-201ENST00000579212 100 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 AC136601.2-201ENST00000604356 474 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.15□□□□□ -1.91
TIMP4Q99727 AC093908.1-201ENST00000623125 8092 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
TIMP4Q99727 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
TIMP4Q99727 AC007785.2-201ENST00000598627 1916 ntBASIC3.15□□□□□ -1.91
TIMP4Q99727 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
TIMP4Q99727 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.14□□□□□ -1.91
TIMP4Q99727 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.14□□□□□ -1.91
TIMP4Q99727 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
TIMP4Q99727 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
TIMP4Q99727 RNU1-33P-201ENST00000364249 162 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 Y_RNA.276-201ENST00000364732 109 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 RNA5SP267-201ENST00000364893 126 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 Y_RNA.350-201ENST00000365409 98 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.14□□□□□ -1.91
TIMP4Q99727 ARL5AP4-201ENST00000430731 512 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 SNRPEP9-201ENST00000436794 238 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 SETP5-201ENST00000437270 562 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 AL357552.1-201ENST00000445254 415 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.14□□□□□ -1.91
TIMP4Q99727 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.14□□□□□ -1.91
TIMP4Q99727 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.14□□□□□ -1.91
TIMP4Q99727 RN7SL594P-201ENST00000470590 287 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 RPL32P34-201ENST00000486380 400 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.14□□□□□ -1.91
TIMP4Q99727 RNU2-27P-201ENST00000516185 142 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.14□□□□□ -1.91
TIMP4Q99727 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.14□□□□□ -1.91
TIMP4Q99727 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.14□□□□□ -1.91
TIMP4Q99727 AC005476.1-201ENST00000554427 397 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 AC096772.1-201ENST00000609146 564 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 AC130454.1-201ENST00000622948 401 ntBASIC3.14□□□□□ -1.91
TIMP4Q99727 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.14□□□□□ -1.91
TIMP4Q99727 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
TIMP4Q99727 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
TIMP4Q99727 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms