Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNU1-61P-201ENST00000516107 151 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 AC126177.3-201ENST00000551839 688 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 AMZ2P1-203ENST00000565833 850 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.61□□□□□ -1.83
USP39Q53GS9 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.61□□□□□ -1.83
USP39Q53GS9 AC034102.8-201ENST00000615146 484 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 AL353748.2-201ENST00000622148 471 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 AL450472.1-202ENST00000637286 180 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.61□□□□□ -1.83
USP39Q53GS9 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
USP39Q53GS9 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
USP39Q53GS9 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USP39Q53GS9 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
USP39Q53GS9 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USP39Q53GS9 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP39Q53GS9 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.6□□□□□ -1.83
USP39Q53GS9 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP39Q53GS9 AL391987.6-201ENST00000305671 199 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 Y_RNA.270-201ENST00000364693 104 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 RNU6-1179P-201ENST00000384667 107 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 MIR128-1-201ENST00000384921 82 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 SNORD115-46-201ENST00000390982 71 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 RNU6-882P-201ENST00000391025 103 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 AC007098.1-201ENST00000420122 367 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 HMGB1P27-201ENST00000431429 603 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 AC133134.1-201ENST00000466800 359 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 MED28P2-201ENST00000475771 317 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 AC025518.1-201ENST00000479856 347 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.6□□□□□ -1.83
USP39Q53GS9 AC010469.2-201ENST00000496412 480 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 APOOP4-201ENST00000513530 597 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.6□□□□□ -1.83
USP39Q53GS9 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.6□□□□□ -1.83
USP39Q53GS9 AC008011.1-201ENST00000545989 227 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 BDH2P1-201ENST00000602288 736 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 AC008962.1-201ENST00000605729 304 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.6□□□□□ -1.83
USP39Q53GS9 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.6□□□□□ -1.83
USP39Q53GS9 Z99571.1-201ENST00000636677 394 ntBASIC3.6□□□□□ -1.83
USP39Q53GS9 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP39Q53GS9 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.6□□□□□ -1.83
USP39Q53GS9 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP39Q53GS9 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.59□□□□□ -1.83
USP39Q53GS9 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
USP39Q53GS9 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.59□□□□□ -1.83
USP39Q53GS9 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.59□□□□□ -1.83
USP39Q53GS9 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
USP39Q53GS9 RPL9P7-201ENST00000330965 580 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 RNU4-35P-201ENST00000362588 141 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 Y_RNA.65-201ENST00000362846 100 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 Y_RNA.352-201ENST00000365439 102 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 RNU6-933P-201ENST00000384424 107 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 MIR628-201ENST00000385229 95 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
USP39Q53GS9 Z98941.1-201ENST00000407764 100 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 RNA5SP494-201ENST00000410653 129 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.59□□□□□ -1.83
USP39Q53GS9 AL592045.1-201ENST00000429867 352 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 AL513043.1-201ENST00000439124 535 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 RPL26P6-201ENST00000440913 438 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 HIGD1AP2-201ENST00000446367 280 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 SSXP4-201ENST00000451349 245 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.59□□□□□ -1.83
USP39Q53GS9 RNU6-1037P-201ENST00000459571 107 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 RPL9P9-202ENST00000466501 579 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.59□□□□□ -1.83
USP39Q53GS9 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.59□□□□□ -1.83
USP39Q53GS9 RNU6-927P-201ENST00000516199 100 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 SNORA31.6-201ENST00000516241 130 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 SNORA70.18-201ENST00000516696 98 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 RNU6-255P-201ENST00000516957 105 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 RNU6-840P-201ENST00000517275 65 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 DEFB108E-201ENST00000524692 240 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 TRAV37-201ENST00000553906 342 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.59□□□□□ -1.83
USP39Q53GS9 AC136932.1-201ENST00000574771 208 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 MIR8057-201ENST00000620957 69 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 AP003355.3-201ENST00000623465 114 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 AC127459.3-201ENST00000624328 466 ntBASIC3.59□□□□□ -1.83
USP39Q53GS9 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
USP39Q53GS9 MTND5P9-201ENST00000503854 1755 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
USP39Q53GS9 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.58□□□□□ -1.84
USP39Q53GS9 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
USP39Q53GS9 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
USP39Q53GS9 Y_RNA.269-201ENST00000364685 89 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 RNU6-384P-201ENST00000364900 104 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 RNU6-662P-201ENST00000384253 104 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 Y_RNA.464-201ENST00000384282 110 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 MIR548I2-201ENST00000408348 149 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 AL096701.2-201ENST00000416920 238 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 AC096920.1-201ENST00000423991 241 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
USP39Q53GS9 AC005300.1-201ENST00000428401 373 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 MTND3P9-201ENST00000429526 346 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 AC115115.1-201ENST00000449927 248 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
USP39Q53GS9 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.58□□□□□ -1.84
USP39Q53GS9 RNU4-71P-201ENST00000516258 113 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 144.7 ms