Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC0.54□□□□□ -2.32
FOXA3P55318 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC0.54□□□□□ -2.32
FOXA3P55318 TIMM9P2-201ENST00000419324 266 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC0.54□□□□□ -2.32
FOXA3P55318 RPL17P35-201ENST00000432217 549 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 NEFMP1-201ENST00000443423 1006 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.54□□□□□ -2.32
FOXA3P55318 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.54□□□□□ -2.32
FOXA3P55318 AL606517.1-201ENST00000446914 387 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 EEF1E1P1-201ENST00000446998 430 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
FOXA3P55318 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.54□□□□□ -2.32
FOXA3P55318 RNU7-59P-201ENST00000459101 61 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 snoU109.2-201ENST00000459316 135 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 AC145146.1-201ENST00000496370 254 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 AC097473.1-201ENST00000508142 408 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
FOXA3P55318 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
FOXA3P55318 SNORD60.2-201ENST00000516883 86 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC0.54□□□□□ -2.32
FOXA3P55318 AC087897.1-201ENST00000550134 156 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC0.54□□□□□ -2.32
FOXA3P55318 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.54□□□□□ -2.32
FOXA3P55318 MIR4293-201ENST00000584305 78 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 AC006270.3-201ENST00000605967 1036 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 AC090186.1-201ENST00000605991 572 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 AC005858.4-201ENST00000623191 700 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 PCMTD1P7-201ENST00000634506 357 ntBASIC0.54□□□□□ -2.32
FOXA3P55318 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC0.54□□□□□ -2.32
FOXA3P55318 RNU6-212P-201ENST00000362642 104 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 RNU6-1284P-201ENST00000363701 100 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 MIR19B1-201ENST00000384829 87 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 MIR548B-201ENST00000385247 97 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 RNU11-5P-201ENST00000391216 129 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 RNU6-1025P-201ENST00000410629 104 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC0.53□□□□□ -2.32
FOXA3P55318 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.53□□□□□ -2.32
FOXA3P55318 UBE2D3P3-201ENST00000426992 425 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 RPS15AP10-201ENST00000432472 382 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.53□□□□□ -2.32
FOXA3P55318 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC0.53□□□□□ -2.32
FOXA3P55318 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC0.53□□□□□ -2.32
FOXA3P55318 RNA5SP437-201ENST00000517249 129 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC0.53□□□□□ -2.32
FOXA3P55318 MTND1P36-201ENST00000522384 936 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 AL136520.1-202ENST00000555494 763 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 AC005776.1-201ENST00000603164 290 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 AC004987.4-201ENST00000603383 338 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 AC007363.1-201ENST00000604736 620 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 RMST_4.1-201ENST00000616886 107 ntBASIC0.53□□□□□ -2.32
FOXA3P55318 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
FOXA3P55318 MTND5P33-201ENST00000571250 1450 ntBASIC0.53□□□□□ -2.33
FOXA3P55318 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.52□□□□□ -2.33
FOXA3P55318 RNU5B-4P-201ENST00000363508 111 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 Y_RNA.332-201ENST00000365271 113 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 FGF7P8-201ENST00000402994 292 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 AL359704.1-201ENST00000411586 781 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC0.52□□□□□ -2.33
FOXA3P55318 AC009518.2-201ENST00000418056 731 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 AC083875.1-201ENST00000419509 405 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 Z82205.1-201ENST00000428456 297 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.52□□□□□ -2.33
FOXA3P55318 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC0.52□□□□□ -2.33
FOXA3P55318 AP000542.1-201ENST00000448473 371 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 PAXBP1P1-201ENST00000449315 447 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 ZNF886P-201ENST00000450781 723 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.52□□□□□ -2.33
FOXA3P55318 MTND1P16-201ENST00000465177 898 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 AL163540.1-201ENST00000485382 386 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.52□□□□□ -2.33
FOXA3P55318 SNORA31.16-201ENST00000516773 139 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC0.52□□□□□ -2.33
FOXA3P55318 AC136628.3-201ENST00000521868 290 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 DEFB130C-202ENST00000530001 230 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.52□□□□□ -2.33
FOXA3P55318 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC0.52□□□□□ -2.33
FOXA3P55318 CR383656.8-201ENST00000549046 145 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 AC092325.1-201ENST00000566449 554 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 AC008088.1-201ENST00000580993 280 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.52□□□□□ -2.33
FOXA3P55318 MTCO2P2-201ENST00000591258 225 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 VN1R107P-201ENST00000601784 209 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 AL358072.1-201ENST00000604156 575 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 AC069114.2-201ENST00000604699 304 ntBASIC0.52□□□□□ -2.33
FOXA3P55318 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC0.52□□□□□ -2.33
FOXA3P55318 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
FOXA3P55318 RNU6-236P-201ENST00000363886 106 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 SNORA4.1-201ENST00000364263 144 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 RNU6-609P-201ENST00000365459 107 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 MIR222-201ENST00000384992 110 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 RNU6-278P-201ENST00000390945 109 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC0.51□□□□□ -2.33
FOXA3P55318 RNU6-733P-201ENST00000410759 104 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 RNU2-7P-201ENST00000410794 178 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 CYCSP33-201ENST00000414485 327 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 AL953862.1-201ENST00000423016 168 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC0.51□□□□□ -2.33
FOXA3P55318 TIMM9P1-201ENST00000436122 256 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 AC009541.1-201ENST00000438279 2662 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 SNRPEP7-201ENST00000438350 220 ntBASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms