Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.25□□□□□ -2.05
TNFRSF4P43489 TIMM9P3-201ENST00000428659 274 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 C8orf59P1-201ENST00000429930 303 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC000111.3-201ENST00000433478 193 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.25□□□□□ -2.05
TNFRSF4P43489 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.25□□□□□ -2.05
TNFRSF4P43489 CKS1BP2-201ENST00000497342 240 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC019235.1-201ENST00000503847 207 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 Y_RNA.704-201ENST00000516851 102 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.25□□□□□ -2.05
TNFRSF4P43489 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC104383.1-201ENST00000530297 370 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.25□□□□□ -2.05
TNFRSF4P43489 HMGB1P33-201ENST00000563485 527 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC080078.2-201ENST00000603766 501 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC021646.1-201ENST00000605469 484 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 AP001330.5-201ENST00000607176 411 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC093788.1-201ENST00000609356 927 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 uc_338.11-201ENST00000619132 160 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC026585.1-201ENST00000619582 524 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC009831.4-201ENST00000620744 325 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC068137.3-201ENST00000639191 341 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 AC073869.6-201ENST00000640656 341 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 RBBP8P1-201ENST00000449447 1844 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
TNFRSF4P43489 MTND4P14-201ENST00000435799 1354 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
TNFRSF4P43489 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
TNFRSF4P43489 Y_RNA.6-201ENST00000362350 114 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 RNU4-12P-201ENST00000365233 139 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 U8.8-201ENST00000365399 135 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 RNU6-517P-201ENST00000384362 110 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 RNU6-843P-201ENST00000384454 104 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 Y_RNA.505-201ENST00000384489 102 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 MIR181A1-201ENST00000385026 110 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
TNFRSF4P43489 RNU2-29P-201ENST00000410423 189 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.24□□□□□ -2.05
TNFRSF4P43489 MTND3P21-201ENST00000433774 331 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.24□□□□□ -2.05
TNFRSF4P43489 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.24□□□□□ -2.05
TNFRSF4P43489 AL118520.1-201ENST00000450770 291 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 SNRPFP3-201ENST00000457792 225 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 RPL7P43-201ENST00000478876 753 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 RN7SL499P-201ENST00000481141 276 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.24□□□□□ -2.05
TNFRSF4P43489 AC104136.1-201ENST00000512969 394 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 AC105417.1-201ENST00000514691 285 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 RNU1-86P-201ENST00000516108 154 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 SNORA40.12-201ENST00000516329 111 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 RNU1-107P-201ENST00000516617 154 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 Y_RNA.693-201ENST00000516641 110 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 RN7SKP219-201ENST00000516825 296 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 AP005902.1-201ENST00000521358 186 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 CR383656.8-201ENST00000549046 145 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 PSMA3P-201ENST00000555485 635 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 AC015712.3-201ENST00000559380 164 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 TPRKBP2-201ENST00000565969 475 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.24□□□□□ -2.05
TNFRSF4P43489 MTCO3P13-201ENST00000577757 781 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.24□□□□□ -2.05
TNFRSF4P43489 AL138963.2-201ENST00000605137 226 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 BNIP3P10-201ENST00000605360 577 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.24□□□□□ -2.05
TNFRSF4P43489 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 MIR5739-201ENST00000619803 80 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 MIR6733-201ENST00000635723 61 ntBASIC2.24□□□□□ -2.05
TNFRSF4P43489 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.24□□□□□ -2.05
TNFRSF4P43489 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
TNFRSF4P43489 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.23□□□□□ -2.05
TNFRSF4P43489 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.23□□□□□ -2.05
TNFRSF4P43489 RNU6-552P-201ENST00000362869 119 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 RNA5SP393-201ENST00000363423 117 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 Y_RNA.255-201ENST00000364581 97 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 SNORA69-201ENST00000383895 132 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 SNORD116-20-201ENST00000384529 92 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 Y_RNA.554-201ENST00000384672 102 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 SNORA48.3-201ENST00000391081 134 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.23□□□□□ -2.05
TNFRSF4P43489 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.23□□□□□ -2.05
TNFRSF4P43489 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.23□□□□□ -2.05
TNFRSF4P43489 AL591806.2-201ENST00000433122 173 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 AC016691.1-201ENST00000441321 413 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.23□□□□□ -2.05
TNFRSF4P43489 AC073901.1-201ENST00000462471 408 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 GMFBP1-201ENST00000467831 427 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 AC140059.1-201ENST00000489238 361 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 AC108210.2-201ENST00000503681 201 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 AC008526.1-201ENST00000509149 338 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 MTND3P25-201ENST00000509243 135 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 AF213884.2-201ENST00000510417 903 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.23□□□□□ -2.05
TNFRSF4P43489 SCARNA16.3-201ENST00000516595 184 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 RNU6-1178P-201ENST00000516674 107 ntBASIC2.23□□□□□ -2.05
TNFRSF4P43489 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.23□□□□□ -2.05
TNFRSF4P43489 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 160.1 ms