Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 Y_RNA.378-201ENST00000365652 113 ntBASIC2.55□□□□□ -2
HNF4AP41235 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.55□□□□□ -2
HNF4AP41235 AL162578.1-201ENST00000406202 378 ntBASIC2.55□□□□□ -2
HNF4AP41235 EEF1A1P40-201ENST00000412883 573 ntBASIC2.55□□□□□ -2
HNF4AP41235 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.55□□□□□ -2
HNF4AP41235 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.55□□□□□ -2
HNF4AP41235 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.55□□□□□ -2
HNF4AP41235 MYL8P-204ENST00000431574 518 ntBASIC2.55□□□□□ -2
HNF4AP41235 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.55□□□□□ -2
HNF4AP41235 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.55□□□□□ -2
HNF4AP41235 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.55□□□□□ -2
HNF4AP41235 PMCHL2-203ENST00000457791 237 ntBASIC2.55□□□□□ -2
HNF4AP41235 SNORD109B-201ENST00000458961 67 ntBASIC2.55□□□□□ -2
HNF4AP41235 SNORD109A-201ENST00000459128 67 ntBASIC2.55□□□□□ -2
HNF4AP41235 AC073901.1-201ENST00000462471 408 ntBASIC2.55□□□□□ -2
HNF4AP41235 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.55□□□□□ -2
HNF4AP41235 AC011005.2-201ENST00000487324 359 ntBASIC2.55□□□□□ -2
HNF4AP41235 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.55□□□□□ -2
HNF4AP41235 AC091951.2-201ENST00000500762 203 ntBASIC2.55□□□□□ -2
HNF4AP41235 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.55□□□□□ -2
HNF4AP41235 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.55□□□□□ -2
HNF4AP41235 AC010486.1-201ENST00000511793 424 ntBASIC2.55□□□□□ -2
HNF4AP41235 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.55□□□□□ -2
HNF4AP41235 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.55□□□□□ -2
HNF4AP41235 AC079598.5-201ENST00000547460 117 ntBASIC2.55□□□□□ -2
HNF4AP41235 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.55□□□□□ -2
HNF4AP41235 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.55□□□□□ -2
HNF4AP41235 RPS15AP11-201ENST00000594193 385 ntBASIC2.55□□□□□ -2
HNF4AP41235 AL138889.2-201ENST00000603883 242 ntBASIC2.55□□□□□ -2
HNF4AP41235 AL138963.2-201ENST00000605137 226 ntBASIC2.55□□□□□ -2
HNF4AP41235 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.55□□□□□ -2
HNF4AP41235 AP003400.5-201ENST00000624827 617 ntBASIC2.55□□□□□ -2
HNF4AP41235 Y_RNA.157-201ENST00000363638 102 ntBASIC2.54□□□□□ -2
HNF4AP41235 SNORA3A-201ENST00000364113 130 ntBASIC2.54□□□□□ -2
HNF4AP41235 RNU6-715P-201ENST00000365204 103 ntBASIC2.54□□□□□ -2
HNF4AP41235 SNORA16.2-201ENST00000390991 127 ntBASIC2.54□□□□□ -2
HNF4AP41235 SNORD70.1-201ENST00000391007 85 ntBASIC2.54□□□□□ -2
HNF4AP41235 AL360182.1-201ENST00000397433 468 ntBASIC2.54□□□□□ -2
HNF4AP41235 RN7SKP158-201ENST00000410453 326 ntBASIC2.54□□□□□ -2
HNF4AP41235 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.54□□□□□ -2
HNF4AP41235 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.54□□□□□ -2
HNF4AP41235 AL669831.1-202ENST00000428504 417 ntBASIC2.54□□□□□ -2
HNF4AP41235 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.54□□□□□ -2
HNF4AP41235 GTF2IP13-201ENST00000438487 386 ntBASIC2.54□□□□□ -2
HNF4AP41235 USP9YP8-201ENST00000441913 500 ntBASIC2.54□□□□□ -2
HNF4AP41235 AC124916.1-201ENST00000444020 547 ntBASIC2.54□□□□□ -2
HNF4AP41235 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.54□□□□□ -2
HNF4AP41235 AC117503.1-201ENST00000472241 394 ntBASIC2.54□□□□□ -2
HNF4AP41235 CKS1BP2-201ENST00000497342 240 ntBASIC2.54□□□□□ -2
HNF4AP41235 AC091885.1-201ENST00000506658 268 ntBASIC2.54□□□□□ -2
HNF4AP41235 SNORA25.11-201ENST00000515935 105 ntBASIC2.54□□□□□ -2
HNF4AP41235 RNU5B-3P-201ENST00000516601 115 ntBASIC2.54□□□□□ -2
HNF4AP41235 Y_RNA.702-201ENST00000516843 96 ntBASIC2.54□□□□□ -2
HNF4AP41235 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.54□□□□□ -2
HNF4AP41235 BNIP3P6-201ENST00000549284 499 ntBASIC2.54□□□□□ -2
HNF4AP41235 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.54□□□□□ -2
HNF4AP41235 AC009994.1-201ENST00000606889 253 ntBASIC2.54□□□□□ -2
HNF4AP41235 AC104260.1-201ENST00000616660 539 ntBASIC2.54□□□□□ -2
HNF4AP41235 MIR5739-201ENST00000619803 80 ntBASIC2.54□□□□□ -2
HNF4AP41235 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.54□□□□□ -2
HNF4AP41235 MIR203B-201ENST00000636080 86 ntBASIC2.54□□□□□ -2
HNF4AP41235 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
HNF4AP41235 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
HNF4AP41235 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.54□□□□□ -2
HNF4AP41235 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.54□□□□□ -2
HNF4AP41235 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.53□□□□□ -2
HNF4AP41235 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.53□□□□□ -2
HNF4AP41235 RNA5SP240-201ENST00000365355 128 ntBASIC2.53□□□□□ -2
HNF4AP41235 Y_RNA.373-201ENST00000365600 103 ntBASIC2.53□□□□□ -2
HNF4AP41235 RNA5SP210-201ENST00000391034 120 ntBASIC2.53□□□□□ -2
HNF4AP41235 ARL5AP4-201ENST00000430731 512 ntBASIC2.53□□□□□ -2
HNF4AP41235 AC098614.3-201ENST00000438957 440 ntBASIC2.53□□□□□ -2
HNF4AP41235 AC011816.1-201ENST00000441346 546 ntBASIC2.53□□□□□ -2
HNF4AP41235 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.53□□□□□ -2
HNF4AP41235 CYP2C59P-201ENST00000457790 269 ntBASIC2.53□□□□□ -2
HNF4AP41235 AC112771.1-201ENST00000463581 102 ntBASIC2.53□□□□□ -2
HNF4AP41235 AL049873.1-201ENST00000480540 376 ntBASIC2.53□□□□□ -2
HNF4AP41235 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.53□□□□□ -2
HNF4AP41235 AC112206.3-201ENST00000514578 389 ntBASIC2.53□□□□□ -2
HNF4AP41235 Y_RNA.665-201ENST00000516177 98 ntBASIC2.53□□□□□ -2
HNF4AP41235 RNU6-875P-201ENST00000516488 106 ntBASIC2.53□□□□□ -2
HNF4AP41235 AC090136.1-201ENST00000520009 240 ntBASIC2.53□□□□□ -2
HNF4AP41235 AC107953.1-201ENST00000522216 297 ntBASIC2.53□□□□□ -2
HNF4AP41235 CBX3P7-201ENST00000532876 502 ntBASIC2.53□□□□□ -2
HNF4AP41235 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.53□□□□□ -2
HNF4AP41235 OR11H5P-201ENST00000554039 926 ntBASIC2.53□□□□□ -2
HNF4AP41235 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.53□□□□□ -2
HNF4AP41235 MIR5092-201ENST00000583139 88 ntBASIC2.53□□□□□ -2
HNF4AP41235 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.53□□□□□ -2
HNF4AP41235 AC011712.1-201ENST00000588959 234 ntBASIC2.53□□□□□ -2
HNF4AP41235 AC087045.1-201ENST00000605856 382 ntBASIC2.53□□□□□ -2
HNF4AP41235 AL136221.1-201ENST00000621449 509 ntBASIC2.53□□□□□ -2
HNF4AP41235 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.53□□□□□ -2
HNF4AP41235 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HNF4AP41235 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
HNF4AP41235 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HNF4AP41235 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HNF4AP41235 OR56A5-201ENST00000340110 738 ntBASIC2.52□□□□□ -2.01
HNF4AP41235 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HNF4AP41235 RNU6-393P-201ENST00000384475 107 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms