Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MIR6853-201ENST00000619642 74 ntBASIC4.32□□□□□ -1.72
MSX1P28360 MIR8069-2-201ENST00000621412 86 ntBASIC4.32□□□□□ -1.72
MSX1P28360 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.32□□□□□ -1.72
MSX1P28360 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
MSX1P28360 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSX1P28360 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX1P28360 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.32□□□□□ -1.72
MSX1P28360 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSX1P28360 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.32□□□□□ -1.72
MSX1P28360 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSX1P28360 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSX1P28360 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.31□□□□□ -1.72
MSX1P28360 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.31□□□□□ -1.72
MSX1P28360 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MSX1P28360 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.31□□□□□ -1.72
MSX1P28360 AC125257.1-201ENST00000560400 2930 ntBASIC4.31□□□□□ -1.72
MSX1P28360 SNORD115-30-201ENST00000364117 82 ntBASIC4.31□□□□□ -1.72
MSX1P28360 RNU6-1144P-201ENST00000384247 104 ntBASIC4.31□□□□□ -1.72
MSX1P28360 PPIAP31-201ENST00000405422 495 ntBASIC4.31□□□□□ -1.72
MSX1P28360 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.31□□□□□ -1.72
MSX1P28360 NDUFB4P6-201ENST00000436819 366 ntBASIC4.31□□□□□ -1.72
MSX1P28360 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.31□□□□□ -1.72
MSX1P28360 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.31□□□□□ -1.72
MSX1P28360 AC245047.8-201ENST00000456455 284 ntBASIC4.31□□□□□ -1.72
MSX1P28360 RPL23AP70-201ENST00000483361 460 ntBASIC4.31□□□□□ -1.72
MSX1P28360 RPS27AP10-201ENST00000496103 208 ntBASIC4.31□□□□□ -1.72
MSX1P28360 RN7SKP46-201ENST00000515942 234 ntBASIC4.31□□□□□ -1.72
MSX1P28360 RNU2-56P-201ENST00000516826 190 ntBASIC4.31□□□□□ -1.72
MSX1P28360 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.31□□□□□ -1.72
MSX1P28360 MIR6129-201ENST00000616087 109 ntBASIC4.31□□□□□ -1.72
MSX1P28360 MIR6844-201ENST00000637122 62 ntBASIC4.31□□□□□ -1.72
MSX1P28360 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.31□□□□□ -1.72
MSX1P28360 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MSX1P28360 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSX1P28360 AC139713.2-215ENST00000641428 5037 ntBASIC4.31□□□□□ -1.72
MSX1P28360 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
MSX1P28360 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.31□□□□□ -1.72
MSX1P28360 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSX1P28360 NOL8P1-201ENST00000508336 3529 ntBASIC4.3□□□□□ -1.72
MSX1P28360 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSX1P28360 AL672167.1-204ENST00000641875 3017 ntBASIC4.3□□□□□ -1.72
MSX1P28360 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
MSX1P28360 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
MSX1P28360 RNU6-270P-201ENST00000364131 105 ntBASIC4.3□□□□□ -1.72
MSX1P28360 RNA5SP267-201ENST00000364893 126 ntBASIC4.3□□□□□ -1.72
MSX1P28360 RNU1-64P-201ENST00000365443 163 ntBASIC4.3□□□□□ -1.72
MSX1P28360 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSX1P28360 MIR15B-201ENST00000385045 98 ntBASIC4.3□□□□□ -1.72
MSX1P28360 RNU1-82P-201ENST00000390851 165 ntBASIC4.3□□□□□ -1.72
MSX1P28360 AC099548.1-201ENST00000421443 426 ntBASIC4.3□□□□□ -1.72
MSX1P28360 AL357134.1-201ENST00000445848 426 ntBASIC4.3□□□□□ -1.72
MSX1P28360 RNU7-107P-201ENST00000459121 61 ntBASIC4.3□□□□□ -1.72
MSX1P28360 RPL31P41-201ENST00000477967 372 ntBASIC4.3□□□□□ -1.72
MSX1P28360 AC103975.1-201ENST00000482506 483 ntBASIC4.3□□□□□ -1.72
MSX1P28360 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.3□□□□□ -1.72
MSX1P28360 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.3□□□□□ -1.72
MSX1P28360 RNA5SP76-201ENST00000516277 87 ntBASIC4.3□□□□□ -1.72
MSX1P28360 Y_RNA.709-201ENST00000516952 92 ntBASIC4.3□□□□□ -1.72
MSX1P28360 AC090049.2-201ENST00000550377 109 ntBASIC4.3□□□□□ -1.72
MSX1P28360 AL110118.1-201ENST00000553543 400 ntBASIC4.3□□□□□ -1.72
MSX1P28360 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.3□□□□□ -1.72
MSX1P28360 MIR3136-201ENST00000583498 78 ntBASIC4.3□□□□□ -1.72
MSX1P28360 MIR4715-201ENST00000584117 79 ntBASIC4.3□□□□□ -1.72
MSX1P28360 AL162713.1-201ENST00000604480 262 ntBASIC4.3□□□□□ -1.72
MSX1P28360 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC4.3□□□□□ -1.72
MSX1P28360 SNORD98-201ENST00000636377 67 ntBASIC4.3□□□□□ -1.72
MSX1P28360 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.3□□□□□ -1.72
MSX1P28360 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
MSX1P28360 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.3□□□□□ -1.72
MSX1P28360 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
MSX1P28360 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.3□□□□□ -1.72
MSX1P28360 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
MSX1P28360 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.29□□□□□ -1.72
MSX1P28360 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSX1P28360 AC027290.2-201ENST00000623210 18662 ntBASIC4.29□□□□□ -1.72
MSX1P28360 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.29□□□□□ -1.72
MSX1P28360 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.29□□□□□ -1.72
MSX1P28360 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSX1P28360 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
MSX1P28360 RNU6-755P-201ENST00000364400 103 ntBASIC4.29□□□□□ -1.72
MSX1P28360 RNU6-1180P-201ENST00000364935 107 ntBASIC4.29□□□□□ -1.72
MSX1P28360 Y_RNA.368-201ENST00000365547 113 ntBASIC4.29□□□□□ -1.72
MSX1P28360 SNORA70F-201ENST00000384142 135 ntBASIC4.29□□□□□ -1.72
MSX1P28360 EI24P2-201ENST00000397776 1076 ntBASIC4.29□□□□□ -1.72
MSX1P28360 YPEL5P1-201ENST00000419731 367 ntBASIC4.29□□□□□ -1.72
MSX1P28360 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.29□□□□□ -1.72
MSX1P28360 RPS26P2-201ENST00000440331 348 ntBASIC4.29□□□□□ -1.72
MSX1P28360 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC4.29□□□□□ -1.72
MSX1P28360 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MSX1P28360 HMGN2P10-201ENST00000448085 265 ntBASIC4.29□□□□□ -1.72
MSX1P28360 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC4.29□□□□□ -1.72
MSX1P28360 FCF1P8-201ENST00000510322 597 ntBASIC4.29□□□□□ -1.72
MSX1P28360 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.29□□□□□ -1.72
MSX1P28360 Y_RNA.712-201ENST00000517011 92 ntBASIC4.29□□□□□ -1.72
MSX1P28360 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC4.29□□□□□ -1.72
MSX1P28360 MIR4277-201ENST00000578298 84 ntBASIC4.29□□□□□ -1.72
MSX1P28360 MIR3613-201ENST00000579844 87 ntBASIC4.29□□□□□ -1.72
MSX1P28360 AC011471.1-201ENST00000585766 187 ntBASIC4.29□□□□□ -1.72
MSX1P28360 MIR4679-1-201ENST00000637619 75 ntBASIC4.29□□□□□ -1.72
MSX1P28360 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 171.8 ms