Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC013468.1-201ENST00000608680 598 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 AC008443.7-201ENST00000622195 246 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 AC093648.1-201ENST00000623546 606 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 Z99571.1-201ENST00000636677 394 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 FARSBP1-201ENST00000435808 1778 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
COL6A3P12111 MIR424-201ENST00000362227 98 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 RNU6-1035P-201ENST00000384477 107 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 RNU6-821P-201ENST00000390995 107 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 GTF2IP20-201ENST00000431663 360 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 AL135790.2-201ENST00000437701 267 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.07□□□□□ -2.4
COL6A3P12111 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.07□□□□□ -2.4
COL6A3P12111 MIR5692A1-201ENST00000580523 69 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 ZNF92P3-201ENST00000596594 954 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 MTCYBP22-201ENST00000603788 447 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 AL359314.1-201ENST00000616913 261 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC0.07□□□□□ -2.4
COL6A3P12111 RNA5SP214-201ENST00000363378 118 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 Y_RNA.361-201ENST00000365515 120 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 MIR29C-201ENST00000385231 88 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.06□□□□□ -2.4
COL6A3P12111 RNU6-244P-201ENST00000391028 104 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 MTCO3P18-201ENST00000440206 761 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 MTCO1P44-201ENST00000441935 243 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 AC092757.1-201ENST00000467293 467 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC0.06□□□□□ -2.4
COL6A3P12111 CYB5AP5-201ENST00000549779 389 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 AC010615.3-201ENST00000597319 394 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 AL139286.2-201ENST00000606838 396 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 AC009233.1-201ENST00000616477 371 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC0.06□□□□□ -2.4
COL6A3P12111 OR5T3-201ENST00000303059 1023 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.06□□□□□ -2.4
COL6A3P12111 AC007969.2-201ENST00000441891 191 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC0.06□□□□□ -2.4
COL6A3P12111 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC0.06□□□□□ -2.4
COL6A3P12111 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.06□□□□□ -2.4
COL6A3P12111 MIR4504-201ENST00000577413 92 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 AP001596.2-201ENST00000608410 312 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.06□□□□□ -2.4
COL6A3P12111 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.06□□□□□ -2.4
COL6A3P12111 MTND5P33-201ENST00000571250 1450 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 AL049737.1-201ENST00000413920 1403 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 RNU6-884P-201ENST00000363889 107 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 MIR518D-201ENST00000385014 87 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC0.06□□□□□ -2.4
COL6A3P12111 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.06□□□□□ -2.4
COL6A3P12111 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
COL6A3P12111 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.06□□□□□ -2.4
COL6A3P12111 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.06□□□□□ -2.4
COL6A3P12111 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC0.06□□□□□ -2.4
COL6A3P12111 TRBVA-201ENST00000498804 316 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.06□□□□□ -2.4
COL6A3P12111 RNA5SP137-201ENST00000516833 135 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.06□□□□□ -2.4
COL6A3P12111 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC0.06□□□□□ -2.4
COL6A3P12111 AP000403.1-201ENST00000603349 851 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 AL022345.2-201ENST00000606307 135 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.06□□□□□ -2.4
COL6A3P12111 AL121652.1-201ENST00000608851 448 ntBASIC0.06□□□□□ -2.4
COL6A3P12111 Y_RNA.119-201ENST00000363301 96 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 RNU6-270P-201ENST00000364131 105 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 MIR506-201ENST00000384998 124 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 PRRC2CP1-201ENST00000404428 159 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AC092809.3-201ENST00000415453 231 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 RPS26P5-201ENST00000418544 335 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC0.05□□□□□ -2.4
COL6A3P12111 C1DP1-201ENST00000426049 402 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AC092573.2-201ENST00000434546 243 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.05□□□□□ -2.4
COL6A3P12111 MTCO2P20-201ENST00000437339 673 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.05□□□□□ -2.4
COL6A3P12111 AC132479.1-201ENST00000449160 144 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 LARP1BP2-201ENST00000486594 519 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AC010409.1-201ENST00000487382 476 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 SNORD116-28-201ENST00000516123 91 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 RNU6-1095P-201ENST00000516148 108 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 SCARNA3-201ENST00000517097 143 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.05□□□□□ -2.4
COL6A3P12111 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.05□□□□□ -2.4
COL6A3P12111 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC0.05□□□□□ -2.4
COL6A3P12111 AC010900.2-201ENST00000604508 210 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AC010738.1-201ENST00000604970 987 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.05□□□□□ -2.4
COL6A3P12111 AL078595.3-201ENST00000623815 1166 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 MTND4P8-201ENST00000514997 1362 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AL079343.1-201ENST00000572358 1771 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 LINC02555-201ENST00000563933 1951 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 RNU6-414P-201ENST00000363705 104 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 Y_RNA.326-201ENST00000365176 113 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 NDUFS5P1-201ENST00000405668 289 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 MIR1295A-201ENST00000408463 79 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AL359704.1-201ENST00000411586 781 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC0.05□□□□□ -2.4
COL6A3P12111 RPL7P43-201ENST00000478876 753 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AC002350.1-201ENST00000490759 375 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC0.05□□□□□ -2.4
COL6A3P12111 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC0.05□□□□□ -2.4
COL6A3P12111 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC0.05□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms