Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CHEK2P4-201ENST00000450340 246 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 U8.21-201ENST00000459536 136 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 FO393415.2-201ENST00000480085 343 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.88□□□□□ -1.79
COL6A1P12109 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.88□□□□□ -1.79
COL6A1P12109 SNORA40.15-201ENST00000516884 107 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
COL6A1P12109 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.88□□□□□ -1.79
COL6A1P12109 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.88□□□□□ -1.79
COL6A1P12109 AC004584.2-201ENST00000570407 410 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 CPDP1-201ENST00000579660 283 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.88□□□□□ -1.79
COL6A1P12109 AL121917.1-203ENST00000605534 577 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 MIR3976-201ENST00000606807 139 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 AL161629.2-201ENST00000615347 275 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 AC103858.2-201ENST00000621471 543 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
COL6A1P12109 Z83843.1-201ENST00000604070 3685 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
COL6A1P12109 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL6A1P12109 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL6A1P12109 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
COL6A1P12109 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL6A1P12109 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
COL6A1P12109 ZNF72P-201ENST00000425869 1908 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.87□□□□□ -1.79
COL6A1P12109 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A1P12109 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.87□□□□□ -1.79
COL6A1P12109 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
COL6A1P12109 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A1P12109 MIR412-201ENST00000362142 91 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 MIR423-201ENST00000362201 94 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 RNA5SP126-201ENST00000365092 109 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 RNU4-70P-201ENST00000384579 139 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 EI24P2-201ENST00000397776 1076 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 AL357075.1-201ENST00000404107 726 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 RNU6-1025P-201ENST00000410629 104 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 MTCO3P19-201ENST00000415864 321 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 AC007098.1-201ENST00000420122 367 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 RPL23AP82-202ENST00000427528 469 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.87□□□□□ -1.79
COL6A1P12109 AL583843.1-201ENST00000456070 346 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 RNU6-1132P-201ENST00000459214 107 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.87□□□□□ -1.79
COL6A1P12109 ATP5F1P5-201ENST00000526403 760 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 AC023157.2-201ENST00000540596 141 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 AL360157.1-201ENST00000565962 87 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.87□□□□□ -1.79
COL6A1P12109 RPS29P30-201ENST00000600975 111 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 AL161798.1-201ENST00000604630 131 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 AC123912.5-201ENST00000605470 343 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.87□□□□□ -1.79
COL6A1P12109 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.87□□□□□ -1.79
COL6A1P12109 AC004852.3-201ENST00000614131 326 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 AC078938.1-201ENST00000620993 318 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A1P12109 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A1P12109 AC010733.2-201ENST00000589496 5702 ntBASIC3.87□□□□□ -1.79
COL6A1P12109 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.87□□□□□ -1.79
COL6A1P12109 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL6A1P12109 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A1P12109 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A1P12109 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A1P12109 RPL9P7-201ENST00000330965 580 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 RNU6-799P-201ENST00000363567 107 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 RNU6-472P-201ENST00000384299 107 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 SNORA51.11-201ENST00000384442 131 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 MIR628-201ENST00000385229 95 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 RNU6-700P-201ENST00000391043 107 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.86□□□□□ -1.79
COL6A1P12109 AL513043.1-201ENST00000439124 535 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 OR2AQ1P-201ENST00000451972 200 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 RNU7-169P-201ENST00000459456 61 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 RPL9P9-202ENST00000466501 579 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 AC010265.1-201ENST00000513509 211 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 SNORA25.11-201ENST00000515935 105 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.86□□□□□ -1.79
COL6A1P12109 HSPE1P20-201ENST00000538133 289 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.86□□□□□ -1.79
COL6A1P12109 AC006023.1-201ENST00000603944 259 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.86□□□□□ -1.79
COL6A1P12109 AC138627.2-201ENST00000624202 601 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.86□□□□□ -1.79
COL6A1P12109 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.86□□□□□ -1.79
COL6A1P12109 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.86□□□□□ -1.79
COL6A1P12109 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A1P12109 ZNF299P-201ENST00000406845 1804 ntBASIC3.86□□□□□ -1.79
COL6A1P12109 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
COL6A1P12109 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL6A1P12109 AC010615.1-201ENST00000594254 1764 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 RNY3P11-201ENST00000364153 102 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 RNU6-1317P-201ENST00000364582 104 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.85□□□□□ -1.79
COL6A1P12109 MIR325-201ENST00000385260 98 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 AL603908.1-201ENST00000406098 201 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 RNU4-47P-201ENST00000410876 114 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.85□□□□□ -1.79
COL6A1P12109 EIF4EP2-201ENST00000422816 654 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.85□□□□□ -1.79
COL6A1P12109 AC092423.1-201ENST00000430165 186 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms