Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RPS15AP7-201ENST00000439294 405 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
HOXA3O43365 AL133547.1-201ENST00000448546 220 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 AL500522.2-201ENST00000448562 343 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 RPL30P14-201ENST00000482744 348 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 RN7SL323P-201ENST00000494712 295 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 HMGB3P17-201ENST00000504195 649 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA3O43365 FTH1P9-201ENST00000513251 355 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 RNU5F-8P-201ENST00000515941 111 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 RNU6-1114P-201ENST00000516022 107 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 MIR2114-201ENST00000516645 80 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 RNU7-143P-201ENST00000516781 65 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 RNU6-111P-201ENST00000517179 105 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 CKS1BP7-201ENST00000522230 235 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 DEFB108E-201ENST00000524692 240 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA3O43365 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 AC002076.2-201ENST00000617362 122 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 MIR6075-201ENST00000620782 95 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 MIR7702-201ENST00000621931 59 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
HOXA3O43365 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
HOXA3O43365 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA3O43365 AF117829.1-206ENST00000621883 3802 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXA3O43365 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXA3O43365 HAUS6P2-201ENST00000433254 2404 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXA3O43365 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
HOXA3O43365 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA3O43365 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA3O43365 RNA5SP97-201ENST00000365006 84 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 RNU6-926P-201ENST00000384075 107 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 SNORA36A-201ENST00000384221 132 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 RNU6-937P-201ENST00000384325 106 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 MIR30B-201ENST00000384850 88 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
HOXA3O43365 RN7SKP61-201ENST00000410642 295 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 AC023141.4-201ENST00000412031 328 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA3O43365 AC078809.1-201ENST00000427601 140 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 WARS2P1-201ENST00000429678 537 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 AL161651.1-201ENST00000440882 223 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 RPL39P29-201ENST00000447779 157 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 RPL30P12-201ENST00000474666 353 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 PPIAP15-201ENST00000479662 484 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXA3O43365 RNA5SP179-201ENST00000517284 121 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA3O43365 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA3O43365 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXA3O43365 AC008739.3-201ENST00000603262 127 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 AC010900.2-201ENST00000604508 210 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 AC005296.1-201ENST00000616145 209 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 AL450472.1-202ENST00000637286 180 ntBASIC3.21□□□□□ -1.9
HOXA3O43365 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA3O43365 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXA3O43365 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA3O43365 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXA3O43365 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.21□□□□□ -1.9
HOXA3O43365 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXA3O43365 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA3O43365 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.21□□□□□ -1.9
HOXA3O43365 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXA3O43365 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA3O43365 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA3O43365 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA3O43365 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
HOXA3O43365 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXA3O43365 Y_RNA.20-201ENST00000362479 113 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 SNORD27-201ENST00000363981 72 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 Y_RNA.319-201ENST00000365138 92 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
HOXA3O43365 U8.10-201ENST00000384260 133 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXA3O43365 MRPL35P1-201ENST00000404272 572 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 MIR548H3-201ENST00000408771 118 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 RN7SKP156-201ENST00000410308 342 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 AC244670.1-201ENST00000436879 112 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 AL714022.1-201ENST00000439897 151 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 AC096638.1-201ENST00000444678 216 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXA3O43365 RPL32P34-201ENST00000486380 400 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXA3O43365 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXA3O43365 CYCSP30-201ENST00000546447 172 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 AC027288.2-201ENST00000553028 243 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 AC090897.2-201ENST00000581715 130 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 AC091167.4-201ENST00000605079 184 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 MIR432-201ENST00000606207 94 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXA3O43365 AL359198.2-201ENST00000611836 194 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 AL121772.2-201ENST00000614331 297 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 AC012442.3-202ENST00000636742 206 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA3O43365 RBBP8P1-201ENST00000449447 1844 ntBASIC3.2□□□□□ -1.9
HOXA3O43365 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA3O43365 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms