Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 MTND5P9-201ENST00000503854 1755 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 MIR412-201ENST00000362142 91 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 RNU6-960P-201ENST00000364056 120 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 RNU6-743P-201ENST00000364151 106 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 RNU6-1187P-201ENST00000364771 110 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 SNORA25.8-201ENST00000364831 128 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 RNU5E-6P-201ENST00000365574 115 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 RNU6-1257P-201ENST00000384625 110 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 Y_RNA.597-201ENST00000410463 100 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 PIGPP2-201ENST00000411569 458 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 RPS15AP12-201ENST00000419498 388 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 CST2P1-201ENST00000425770 87 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AL117351.1-201ENST00000438864 766 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 JTBP1-201ENST00000441314 247 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AC007327.1-201ENST00000447461 264 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AC012308.1-201ENST00000451232 178 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 DUXAP8-207ENST00000456786 622 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AC005840.1-201ENST00000498412 377 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AC119751.4-201ENST00000507498 357 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AC112198.4-201ENST00000515450 351 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 SNORA3.4-201ENST00000515969 96 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 KC877982.1-201ENST00000602313 470 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AL138889.2-201ENST00000603883 242 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 SNORD114-21-201ENST00000606412 72 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AL355816.2-201ENST00000610049 647 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 AL590240.4-201ENST00000616908 390 ntBASIC0.78□□□□□ -2.28
TRAV1-1A0A0B4J248 Y_RNA.4-201ENST00000362333 112 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 snoU2_19.1-201ENST00000362361 80 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 Y_RNA.332-201ENST00000365271 113 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-360P-201ENST00000390944 104 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 ERHP2-201ENST00000402323 299 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 MIR1267-201ENST00000408723 78 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 RPL21P90-201ENST00000415692 466 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 MTCYBP5-201ENST00000423752 1135 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 ISCA1P6-201ENST00000427740 390 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 snoU109.2-201ENST00000459316 135 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-1092P-201ENST00000516955 87 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 RPL21P5-201ENST00000554662 472 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 MIR3146-201ENST00000580367 79 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 AC098848.2-201ENST00000588023 330 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 AP000860.1-201ENST00000605250 559 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-88P-201ENST00000606801 100 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 AL355802.3-201ENST00000607571 545 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 AC084824.5-201ENST00000612009 413 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 AC092140.2-201ENST00000618027 521 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 AL589994.2-201ENST00000621124 579 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 AC007792.1-201ENST00000623023 402 ntBASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.77□□□□□ -2.29
TRAV1-1A0A0B4J248 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 Y_RNA.110-201ENST00000363220 99 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-414P-201ENST00000363705 104 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU4-38P-201ENST00000364472 129 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 SNORA25.9-201ENST00000365087 128 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-413P-201ENST00000384115 107 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 Y_RNA.472-201ENST00000384322 102 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 SNORD116-20-201ENST00000384529 92 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 BTF3L4P1-201ENST00000413813 468 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AL161935.2-201ENST00000414627 60 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC092809.3-201ENST00000415453 231 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 RPS6P15-201ENST00000431996 751 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 MTND1P30-201ENST00000441241 901 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC093899.1-201ENST00000457984 376 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC130509.1-201ENST00000464158 433 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC091163.3-201ENST00000518269 1144 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 MIR544B-201ENST00000582372 78 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AL078604.3-201ENST00000615580 211 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC130454.1-201ENST00000622948 401 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 FRG1KP-201ENST00000623592 341 ntBASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms