Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RNU6-1211P-201ENST00000459179 105 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 AL121594.1-201ENST00000475906 575 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 AC005840.1-201ENST00000498412 377 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 AC016632.1-201ENST00000503994 196 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 AC004467.1-201ENST00000615678 330 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 AC110774.1-201ENST00000623567 2018 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 RNU6-884P-201ENST00000363889 107 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 RNU6-1141P-201ENST00000364520 107 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 MIR544A-201ENST00000384855 91 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 MIR298-201ENST00000401212 88 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 RNA5SP129-201ENST00000410276 118 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 NDUFS5P4-201ENST00000412983 318 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 RPL23AP93-201ENST00000440847 484 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 RPS20P10-201ENST00000451209 253 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 AC012671.1-201ENST00000451912 203 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 Y_RNA.797-201ENST00000515977 94 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 RPL23AP97-201ENST00000568955 471 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 RN7SL690P-201ENST00000582087 240 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 MIR6820-201ENST00000611508 62 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 USP8P1-201ENST00000494673 3183 ntBASIC4.04□□□□□ -1.76
HIF3AQ9Y2N7 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 SNORD115-8-201ENST00000363856 82 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 SNORD115-38-201ENST00000365037 82 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 RNU6-239P-201ENST00000390990 99 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 FTH1P15-201ENST00000406984 280 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 CRYBB2P1-203ENST00000415709 538 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 AL358075.3-201ENST00000426289 226 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 RAB28P5-201ENST00000427490 651 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 AL049745.1-201ENST00000433953 286 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 RN7SKP122-201ENST00000515923 296 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 RNA5SP468-201ENST00000516782 93 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 AC018448.1-201ENST00000552843 316 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 AL021997.2-201ENST00000615674 271 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 AL138721.1-201ENST00000616756 179 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 AC007546.2-201ENST00000623996 360 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 MIR3658-201ENST00000636291 56 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 MTND5P35-201ENST00000557537 1720 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 FAM35BP-202ENST00000497389 3337 ntBASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.03□□□□□ -1.76
HIF3AQ9Y2N7 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.03□□□□□ -1.77
HIF3AQ9Y2N7 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 Y_RNA.121-201ENST00000363309 113 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 RN7SKP280-201ENST00000364196 304 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 RNU6-275P-201ENST00000364910 107 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 SNORD116-14-201ENST00000383894 92 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 SNORD116-17-201ENST00000383929 92 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 SNORD116-15-201ENST00000384445 92 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 Y_RNA.498-201ENST00000384460 102 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 SNORD116-19-201ENST00000384729 92 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 RN7SKP61-201ENST00000410642 295 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 RPS12P10-201ENST00000427031 377 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 AP000705.1-201ENST00000454567 350 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 MIR7154-201ENST00000620673 73 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 AK9-203ENST00000368948 2478 ntTSL 5 BASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HIF3AQ9Y2N7 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 OR56B2P-202ENST00000641377 2453 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 134.1 ms