Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 RNU1-70P-201ENST00000362618 164 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 SNORA14A-201ENST00000364773 135 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 RPS29P13-201ENST00000402041 169 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 AL031121.1-201ENST00000406553 254 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 RNU4-47P-201ENST00000410876 114 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 RPL32P35-201ENST00000415214 394 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 HIGD1AP2-201ENST00000446367 280 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 HMGN2P10-201ENST00000448085 265 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 PTP4A1P4-201ENST00000512479 322 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 RNA5SP217-201ENST00000515959 91 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 RNU6-1153P-201ENST00000516760 105 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 AC104576.1-201ENST00000524225 88 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 TRAV32-201ENST00000553993 340 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 MIR5690-201ENST00000583739 73 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 AC024153.1-201ENST00000603103 365 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 AP000654.2-201ENST00000605633 586 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 AC005046.1-201ENST00000608515 625 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 KPNA2P1-201ENST00000458289 1591 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 MTND4P23-201ENST00000447723 1363 ntBASIC3.12□□□□□ -1.91
VPS4AQ9UN37 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
VPS4AQ9UN37 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS4AQ9UN37 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS4AQ9UN37 Y_RNA.187-201ENST00000363918 113 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 RNU6-596P-201ENST00000365395 98 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 Y_RNA.579-201ENST00000390939 94 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 SAR1AP2-201ENST00000392696 594 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 RNU6-293P-201ENST00000411259 106 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AC093151.1-201ENST00000427711 313 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AC244505.4-201ENST00000434905 287 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 SSXP5-201ENST00000443473 287 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS4AQ9UN37 RPL26P9-201ENST00000457466 433 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS4AQ9UN37 snoU13.28-201ENST00000459235 104 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 snoU109.2-201ENST00000459316 135 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 RNU6-1037P-201ENST00000459571 107 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS4AQ9UN37 SCARNA20.6-201ENST00000517251 106 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.11□□□□□ -1.91
VPS4AQ9UN37 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AC093249.1-201ENST00000567049 203 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS4AQ9UN37 VN1R107P-201ENST00000601784 209 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AC009314.1-201ENST00000603871 304 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AL121917.1-203ENST00000605534 577 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AC084781.2-201ENST00000615568 161 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 AC244517.12-201ENST00000623581 663 ntBASIC3.11□□□□□ -1.91
VPS4AQ9UN37 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VPS4AQ9UN37 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 Y_RNA.151-201ENST00000363566 112 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 RNU6-898P-201ENST00000365627 104 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 Y_RNA.395-201ENST00000383945 109 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 BTF3P15-201ENST00000455606 336 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 Y_RNA.670-201ENST00000516255 105 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 RNU1-143P-201ENST00000516296 146 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 RN7SKP282-201ENST00000516824 299 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 RNU1-54P-201ENST00000517181 120 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 AC245166.1-201ENST00000521012 253 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 AP000867.2-201ENST00000532468 320 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 AC007536.1-201ENST00000533382 349 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 AC011494.1-201ENST00000596454 237 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 AL133393.1-201ENST00000603277 287 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 AL162713.1-201ENST00000604480 262 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 U1.23-201ENST00000610293 146 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 RNU1-68P-201ENST00000615382 146 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 U1.39-201ENST00000621562 146 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 AC073308.1-201ENST00000623696 305 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 AC091903.1-201ENST00000624322 454 ntBASIC3.1□□□□□ -1.91
VPS4AQ9UN37 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS4AQ9UN37 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 RNU6-78P-201ENST00000362897 107 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms