Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 RNU6-486P-201ENST00000363116 107 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 SNORD56.5-201ENST00000364281 72 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 RNU6-522P-201ENST00000364497 107 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 RNU6-534P-201ENST00000364877 106 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 U8.8-201ENST00000365399 135 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 RNU6-487P-201ENST00000365430 104 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 Y_RNA.453-201ENST00000384223 109 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 Y_RNA.573-201ENST00000384763 105 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 MIR1277-201ENST00000408536 78 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 HMGN2P35-201ENST00000412164 270 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 SNORD56-201ENST00000413522 71 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 NUP35P1-201ENST00000422734 947 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 AC092427.1-202ENST00000430569 476 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 AC117503.1-201ENST00000472241 394 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 SNORA31.23-201ENST00000517219 133 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 MIR3199-1-201ENST00000582434 88 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 RPS15AP11-201ENST00000594193 385 ntBASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LIMA1Q9UHB6 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 RNU6-877P-201ENST00000383868 107 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 AC074117.2-201ENST00000417130 397 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 AP001025.1-201ENST00000486139 332 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 RPL23AP49-201ENST00000492925 468 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 RPL22P13-201ENST00000493291 347 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 SCARNA3-201ENST00000517097 143 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 RN7SKP40-201ENST00000517211 242 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 AC109479.2-201ENST00000517842 174 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 AC079598.5-201ENST00000547460 117 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 MIR3117-201ENST00000584034 78 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 MIR3616-201ENST00000584070 92 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 AL356280.1-201ENST00000603614 379 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 AP000907.4-201ENST00000604143 237 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 AL121917.1-203ENST00000605534 577 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 AC104458.1-201ENST00000608243 463 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 RMST_3.1-201ENST00000611651 109 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 AC024614.3-201ENST00000637860 256 ntBASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LIMA1Q9UHB6 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 Y_RNA.167-201ENST00000363735 109 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 RNA5SP456-201ENST00000364002 114 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 Y_RNA.295-201ENST00000364918 102 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 RPL30P4-201ENST00000429309 333 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 NFU1P2-201ENST00000448700 469 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 HMGN2P26-201ENST00000463169 339 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 AC112771.1-201ENST00000463581 102 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 AC018437.1-201ENST00000492214 406 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 AC023141.11-201ENST00000508864 202 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 SNORA25.11-201ENST00000515935 105 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 SNORA19.2-201ENST00000516013 114 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 SNORA31.18-201ENST00000517043 134 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 AC138761.3-201ENST00000579993 334 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 BNIP3P25-201ENST00000596023 559 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 AL161756.2-201ENST00000604597 246 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 RNU6-85P-201ENST00000605989 107 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 AC096772.1-201ENST00000609146 564 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 AC244517.12-201ENST00000623581 663 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 Z75746.1-201ENST00000440243 2080 ntBASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.76□□□□□ -1.97
LIMA1Q9UHB6 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
LIMA1Q9UHB6 MTND4P27-201ENST00000450813 1354 ntBASIC2.75□□□□□ -1.97
LIMA1Q9UHB6 SNORD62.1-201ENST00000362541 86 ntBASIC2.75□□□□□ -1.97
LIMA1Q9UHB6 SNORD56.1-201ENST00000362913 68 ntBASIC2.75□□□□□ -1.97
LIMA1Q9UHB6 RNU1-109P-201ENST00000383960 147 ntBASIC2.75□□□□□ -1.97
LIMA1Q9UHB6 RNU6-622P-201ENST00000384272 103 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms