Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 Y_RNA.28-201ENST00000362554 111 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 Y_RNA.48-201ENST00000362710 103 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 RNU6-527P-201ENST00000363425 104 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 U3.6-201ENST00000363622 211 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 RNU6-1280P-201ENST00000365211 107 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 SNORA33.2-201ENST00000365413 134 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 RNU6-692P-201ENST00000384496 107 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 AL591034.2-201ENST00000402839 359 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 FTH1P15-201ENST00000406984 280 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 AC018865.2-201ENST00000423631 129 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 AC011816.1-201ENST00000441346 546 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 AC116655.1-201ENST00000508324 901 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 SNORA31.18-201ENST00000517043 134 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 RNU6-699P-201ENST00000517081 110 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 AC078795.3-201ENST00000602913 472 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 U7.8-201ENST00000619968 63 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 RNU6-490P-201ENST00000362985 107 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 SNORD116-20-201ENST00000384529 92 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 MIR591-201ENST00000385290 95 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 RNU6-1077P-201ENST00000410506 102 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AC023141.4-201ENST00000412031 328 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AC126124.2-201ENST00000413542 321 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AL035666.1-201ENST00000446195 348 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 RNU7-23P-201ENST00000459465 62 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 RPL27AP5-201ENST00000469428 449 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 MRPL42P6-201ENST00000486397 371 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AC114801.2-201ENST00000503825 781 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AC022447.4-201ENST00000504053 364 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 SNORA31.1-201ENST00000515993 133 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 SNORA31.5-201ENST00000516190 133 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AP000889.1-201ENST00000530968 660 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 CBX3P8-201ENST00000532412 525 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 VN1R107P-201ENST00000601784 209 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AL360085.1-201ENST00000604713 532 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AC016925.2-201ENST00000605108 242 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AL162274.2-201ENST00000614406 332 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AC092628.2-201ENST00000622492 339 ntBASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.41□□□□□ -1.86
TDP1Q9NUW8 AC017071.1-201ENST00000564407 2204 ntBASIC3.4□□□□□ -1.86
TDP1Q9NUW8 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
TDP1Q9NUW8 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
TDP1Q9NUW8 Y_RNA.111-201ENST00000363248 100 ntBASIC3.4□□□□□ -1.87
TDP1Q9NUW8 Y_RNA.252-201ENST00000364556 101 ntBASIC3.4□□□□□ -1.87
TDP1Q9NUW8 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 AC002075.2-201ENST00000425207 252 ntBASIC3.4□□□□□ -1.87
TDP1Q9NUW8 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 S100A11P2-201ENST00000467589 312 ntBASIC3.4□□□□□ -1.87
TDP1Q9NUW8 AC068781.1-201ENST00000488231 618 ntBASIC3.4□□□□□ -1.87
TDP1Q9NUW8 RNU6-264P-201ENST00000517134 104 ntBASIC3.4□□□□□ -1.87
TDP1Q9NUW8 RN7SKP295-201ENST00000517264 153 ntBASIC3.4□□□□□ -1.87
TDP1Q9NUW8 AC107934.2-201ENST00000518653 310 ntBASIC3.4□□□□□ -1.87
TDP1Q9NUW8 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 AL158827.2-201ENST00000602494 330 ntBASIC3.4□□□□□ -1.87
TDP1Q9NUW8 AL691447.3-201ENST00000635020 330 ntBASIC3.4□□□□□ -1.87
TDP1Q9NUW8 MIR3199-2-201ENST00000636243 86 ntBASIC3.4□□□□□ -1.87
TDP1Q9NUW8 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
TDP1Q9NUW8 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 RNU6-858P-201ENST00000362436 107 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 RNU6-227P-201ENST00000362865 103 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 Y_RNA.148-201ENST00000363557 117 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 MIR606-201ENST00000384851 96 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 AL591043.1-201ENST00000432461 424 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 138.8 ms