Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 BTF3L4P2-201ENST00000392798 346 ntBASIC4.79□□□□□ -1.64
TRERF1Q96PN7 PTGES3P4-201ENST00000426243 356 ntBASIC4.79□□□□□ -1.64
TRERF1Q96PN7 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.79□□□□□ -1.64
TRERF1Q96PN7 MTATP6P4-201ENST00000427725 675 ntBASIC4.79□□□□□ -1.64
TRERF1Q96PN7 AL627311.1-201ENST00000431514 115 ntBASIC4.79□□□□□ -1.64
TRERF1Q96PN7 RPS15AP5-201ENST00000436276 388 ntBASIC4.79□□□□□ -1.64
TRERF1Q96PN7 AL353705.4-201ENST00000449661 238 ntBASIC4.79□□□□□ -1.64
TRERF1Q96PN7 AF186996.7-201ENST00000492781 209 ntBASIC4.79□□□□□ -1.64
TRERF1Q96PN7 AC025445.1-201ENST00000502728 300 ntBASIC4.79□□□□□ -1.64
TRERF1Q96PN7 CYCTP-201ENST00000504253 315 ntBASIC4.79□□□□□ -1.64
TRERF1Q96PN7 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.79□□□□□ -1.64
TRERF1Q96PN7 MIR3145-201ENST00000580727 82 ntBASIC4.79□□□□□ -1.64
TRERF1Q96PN7 RMST_6.1-201ENST00000611980 203 ntBASIC4.79□□□□□ -1.64
TRERF1Q96PN7 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
TRERF1Q96PN7 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
TRERF1Q96PN7 AC009541.1-201ENST00000438279 2662 ntBASIC4.79□□□□□ -1.64
TRERF1Q96PN7 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
TRERF1Q96PN7 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
TRERF1Q96PN7 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.78□□□□□ -1.64
TRERF1Q96PN7 ZNF204P-201ENST00000416749 2397 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
TRERF1Q96PN7 RNU4-80P-201ENST00000363200 141 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 RNU6-429P-201ENST00000384582 108 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 RNU6-239P-201ENST00000390990 99 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 AC091390.3-201ENST00000426478 338 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 Z82210.1-201ENST00000440037 231 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 ABCF2P2-201ENST00000450549 296 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 RPL23AP49-201ENST00000492925 468 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 AC010265.1-201ENST00000513509 211 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 RNU4-60P-201ENST00000517239 135 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.78□□□□□ -1.64
TRERF1Q96PN7 AL391261.3-201ENST00000557194 520 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 UBL5P4-201ENST00000562584 236 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 MIR5695-201ENST00000579717 85 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 AC005296.1-201ENST00000616145 209 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 U4.7-201ENST00000638126 106 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
TRERF1Q96PN7 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
TRERF1Q96PN7 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
TRERF1Q96PN7 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
TRERF1Q96PN7 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
TRERF1Q96PN7 AC022893.2-201ENST00000564832 3296 ntBASIC4.78□□□□□ -1.64
TRERF1Q96PN7 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AL133412.1-201ENST00000380194 2992 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
TRERF1Q96PN7 SNORD115-32-201ENST00000364079 82 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 RNU6-741P-201ENST00000383889 107 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 MIR487A-201ENST00000385009 80 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 MIR10B-201ENST00000385011 110 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 RNY4P18-201ENST00000391107 89 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 MIR1179-201ENST00000408703 91 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AL390729.2-201ENST00000416137 156 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AC016925.1-201ENST00000458303 298 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 RPL21P13-201ENST00000488305 481 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AC146944.2-203ENST00000502493 354 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AC020593.1-201ENST00000507399 299 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AC139495.1-202ENST00000513164 354 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 RNU6-191P-201ENST00000516295 94 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 RNU7-121P-201ENST00000516604 62 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.77□□□□□ -1.65
TRERF1Q96PN7 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AC053481.4-201ENST00000583164 216 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AC006130.2-201ENST00000586202 326 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AL138721.1-201ENST00000616756 179 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
TRERF1Q96PN7 MIR3658-201ENST00000636291 56 ntBASIC4.77□□□□□ -1.65
TRERF1Q96PN7 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
TRERF1Q96PN7 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
TRERF1Q96PN7 AC009812.4-201ENST00000569134 1805 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
TRERF1Q96PN7 RNA5SP197-201ENST00000363357 119 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 Y_RNA.230-201ENST00000364348 109 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 RNA5SP235-201ENST00000365411 114 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 RNU6-213P-201ENST00000384051 104 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 Y_RNA.542-201ENST00000384641 111 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 MIR329-1-201ENST00000385028 80 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 MIR153-2-201ENST00000385225 87 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 SNORA48.7-201ENST00000391302 135 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 RPL30P13-201ENST00000418873 348 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.76□□□□□ -1.65
TRERF1Q96PN7 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.76□□□□□ -1.65
TRERF1Q96PN7 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC4.76□□□□□ -1.65
TRERF1Q96PN7 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.76□□□□□ -1.65
TRERF1Q96PN7 snoU109.2-201ENST00000459316 135 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 RPS26P15-201ENST00000488067 348 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.76□□□□□ -1.65
TRERF1Q96PN7 AC022968.1-201ENST00000567372 442 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 AC020914.4-201ENST00000597690 277 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 MIR7151-201ENST00000617477 60 ntBASIC4.76□□□□□ -1.65
TRERF1Q96PN7 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
TRERF1Q96PN7 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.76□□□□□ -1.65
TRERF1Q96PN7 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.76□□□□□ -1.65
TRERF1Q96PN7 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.75□□□□□ -1.65
TRERF1Q96PN7 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.75□□□□□ -1.65
TRERF1Q96PN7 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
TRERF1Q96PN7 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms