Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AL355297.3-201ENST00000604082 446 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AC068870.2-201ENST00000620635 389 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 MIR7157-201ENST00000635801 60 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 ZNF72P-201ENST00000425869 1908 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AC093908.1-201ENST00000623125 8092 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AL049781.1-201ENST00000623195 3585 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 Y_RNA.27-201ENST00000362540 103 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 Y_RNA.557-201ENST00000384680 107 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 MIR208B-201ENST00000401172 77 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 SPTLC1P2-201ENST00000407089 121 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 MIR1178-201ENST00000408396 91 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 MIR1252-201ENST00000408861 65 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 SNORA57.3-201ENST00000411095 141 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 EIF4EP4-201ENST00000424916 578 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AL445584.1-201ENST00000431451 330 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 MICF-203ENST00000432679 129 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 MTND3P2-201ENST00000438452 342 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 RPS3P1-201ENST00000456781 192 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 RPS23P7-201ENST00000466210 444 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AP000870.1-201ENST00000472927 406 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 Y_RNA.715-201ENST00000517082 110 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 NDUFB9P3-201ENST00000521269 501 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AC007458.1-201ENST00000542812 373 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AC027288.2-201ENST00000553028 243 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AL117187.1-201ENST00000555482 181 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 MIR4646-201ENST00000580775 63 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AL356575.1-201ENST00000603008 283 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AL133393.1-201ENST00000603277 287 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AL162713.1-201ENST00000604480 262 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AL670379.2-201ENST00000604983 252 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 BRDTP1-201ENST00000605735 677 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 AC211433.2-201ENST00000608433 387 ntBASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CLRN3Q8NCR9 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 AC058791.1-201ENST00000608412 3198 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 RNU6-222P-201ENST00000362438 107 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 RNU1-76P-201ENST00000362903 159 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 RNU6-450P-201ENST00000364654 107 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 RNY3P4-201ENST00000384428 101 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 Y_RNA.551-201ENST00000384661 102 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 AL356057.3-201ENST00000402607 340 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 MIR320B2-201ENST00000408479 138 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 MIR1179-201ENST00000408703 91 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 DPH3P2-201ENST00000422618 250 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 AL358176.2-201ENST00000425769 204 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 AL162591.2-201ENST00000449634 317 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 AP000705.1-201ENST00000454567 350 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 RPL35AP15-201ENST00000468042 339 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 SNORA25.11-201ENST00000515935 105 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 RNU6-1046P-201ENST00000516538 107 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 RNU6-58P-201ENST00000517143 103 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 MIR4691-201ENST00000583764 85 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 U3.53-201ENST00000628922 216 ntBASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CLRN3Q8NCR9 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 RNU6-280P-201ENST00000364145 104 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 SNORA68.1-201ENST00000364537 132 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 RNU6-805P-201ENST00000365643 106 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 RNU6-1105P-201ENST00000384774 107 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 U3.19-201ENST00000390893 196 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 SDHCP2-201ENST00000398565 501 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 RNA5SP293-201ENST00000410527 113 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 AL356968.1-201ENST00000416622 474 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 144.4 ms