Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
SKA3Q8IX90 AP005435.4-201ENST00000529514 284 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 BNIP3P6-201ENST00000549284 499 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 MIR5583-1-201ENST00000580941 59 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC021646.1-201ENST00000605469 484 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 NDUFA8P1-201ENST00000605525 367 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 AP001596.2-201ENST00000608410 312 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC093788.1-201ENST00000609356 927 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC007684.1-201ENST00000609671 477 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
SKA3Q8IX90 AC024581.2-201ENST00000619986 252 ntBASIC1.95□□□□□ -2.1
SKA3Q8IX90 RNU6-78P-201ENST00000362897 107 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 RNU6-517P-201ENST00000384362 110 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 RNU6-843P-201ENST00000384454 104 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 Y_RNA.559-201ENST00000384686 107 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 RNU2-29P-201ENST00000410423 189 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 RNU2-66P-201ENST00000410650 161 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 RNA5SP508-201ENST00000411327 119 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.94□□□□□ -2.1
SKA3Q8IX90 AL356379.1-201ENST00000414105 126 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 CYCSP48-201ENST00000417124 323 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 AL353193.1-201ENST00000421444 268 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 MTCYBP8-201ENST00000422855 651 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 USP9YP14-201ENST00000430663 563 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 AL365400.1-201ENST00000431854 640 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 GMFBP1-201ENST00000467831 427 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.94□□□□□ -2.1
SKA3Q8IX90 SNORA43.2-201ENST00000516652 128 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 MIR514B-201ENST00000516774 80 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.94□□□□□ -2.1
SKA3Q8IX90 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 AC136619.2-201ENST00000563361 631 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 MIR5571-201ENST00000577998 113 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 AC004223.2-201ENST00000590309 544 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.94□□□□□ -2.1
SKA3Q8IX90 AC080013.6-201ENST00000606185 215 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 AC009831.4-201ENST00000620744 325 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 uc_338.20-201ENST00000621563 178 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 AC022418.1-201ENST00000624118 445 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 AC005609.4-201ENST00000625071 447 ntBASIC1.94□□□□□ -2.1
SKA3Q8IX90 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SKA3Q8IX90 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.94□□□□□ -2.1
SKA3Q8IX90 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SKA3Q8IX90 AL354685.2-201ENST00000448218 1447 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 RNU1-72P-201ENST00000362976 153 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 RNU6-487P-201ENST00000365430 104 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 RNU6-996P-201ENST00000365438 107 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 SNORA16.2-201ENST00000390991 127 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 RNU2-16P-201ENST00000410712 136 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 AC138623.1-201ENST00000418060 216 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 AC010975.2-201ENST00000427781 588 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 PRPS1P1-201ENST00000445305 876 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 SNRPFP3-201ENST00000457792 225 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 SCARNA18-201ENST00000459004 134 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AC140059.1-201ENST00000489238 361 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 MTND2P33-201ENST00000506452 1031 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AC105313.1-201ENST00000509121 353 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 MTCO3P7-201ENST00000510008 774 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 RNU2-69P-201ENST00000516061 100 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 AP002770.2-201ENST00000543613 532 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 SNRPGP18-201ENST00000553000 214 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 HIF1AP1-201ENST00000553642 175 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AL138976.2-201ENST00000563989 694 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 AC096772.1-201ENST00000609146 564 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AL449363.1-201ENST00000617815 186 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 AL590808.1-201ENST00000618696 141 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC1.93□□□□□ -2.1
SKA3Q8IX90 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SKA3Q8IX90 KPNA2P1-201ENST00000458289 1591 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 MTND5P26-201ENST00000426018 1752 ntBASIC1.93□□□□□ -2.1
SKA3Q8IX90 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 RNA5SP138-201ENST00000365098 114 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 Y_RNA.324-201ENST00000365165 102 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 RNU5E-7P-201ENST00000365290 117 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 RNU6-393P-201ENST00000384475 107 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 SNORD70.1-201ENST00000391007 85 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 RNU6-903P-201ENST00000391270 109 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 AL445529.1-201ENST00000398713 389 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 SNORD23.1-201ENST00000408212 104 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 OR9R1P-201ENST00000412200 877 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 176.7 ms